Salinisphaera sp. LB1: SALB1_3387
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Entry
SALB1_3387 CDS
T05476
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
saln
Salinisphaera sp. LB1
Pathway
saln03030
DNA replication
saln03410
Base excision repair
saln03420
Nucleotide excision repair
saln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SALB1_3387
03410 Base excision repair
SALB1_3387
03420 Nucleotide excision repair
SALB1_3387
03430 Mismatch repair
SALB1_3387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saln03032
]
SALB1_3387
03400 DNA repair and recombination proteins [BR:
saln03400
]
SALB1_3387
Enzymes [BR:
saln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SALB1_3387
DNA replication proteins [BR:
saln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SALB1_3387
DNA repair and recombination proteins [BR:
saln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SALB1_3387
NER (nucleotide excision repair)
GGR (global genome repair) factors
SALB1_3387
MMR (mismatch excision repair)
DNA ligase
SALB1_3387
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SALB1_3387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_NUD
H-kinase_dim
Motif
Other DBs
NCBI-ProteinID:
AWN17581
LinkDB
All DBs
Position
complement(3721752..3723857)
Genome browser
AA seq
701 aa
AA seq
DB search
MSEPVPAAKRKRARALARALAEHSRAYYIEAEPTISDAEYDRLFRELEALEAEYPALVTP
DSPTQRVGAPPVDEFQSVEHATPMLSLANCFDDDELAEFDRRAREGAGVDELVYCAEPKF
DGTALNLRFEAGVMVRATTRGDGITGEDITANARTIRNLPLRLATDHPPAFIEIRGEVVL
ARSRFNALNARLEAQGQKTFVNPRNAAAGSLRQLDSRITATRPLAFMGYGIGRVDGAELT
DSLFEQLRLLADWGFTISPYVDRVTGLQGCRAYYEAMAARRAELDIEIDGCVFKVDDGPS
RDELGFVARAPRWAIARKFPAEEATTTLNSVEFQVGRTGALTPVAKLEPVFVGGVTVSNA
TLHNMDEIERKGIRIGDRVVVRRAGDVIPEIKAVAARGARATAIELPSACPVCGSAVERV
EGEAVARCTGGLVCAAQRREALKHFASRNALDIEGLGERQIEAFVAEGLLHSPADIFSLA
EYRDALVEREGYGEKSVANLLASIEAAKQTTLERFIFALGIREVGQTMARDLARHFGTLE
ALRAEAQRYHQRLADVQAQHPDNKAARDRAMVAEGLQAVPGVGARVAQSIADFFTEPRNI
AVIDALIEAGVHWPSVDTDAAAQPLAGRTFVLTGSMASLTRDEASDRLEALGARVTSSVS
KKTDYVVAGERAGSKRDKAEKLGVAILDEAGLRALLDEHEG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcccgttccggccgccaagcgcaagcgcgcccgggcgctcgcccgggcgctg
gctgagcacagccgtgcctattacatcgaagccgaaccgaccatttcggacgccgagtac
gatcgcctgtttcgcgagctggaggccctcgaggccgagtacccggcgctggtcacgccc
gattcgccgacccagcgtgtcggcgcgccgccggtggatgaattccagtcggtcgagcat
gcgacgccgatgttgtcgctggcgaactgcttcgacgacgacgaactggccgagttcgat
cggcgcgcccgcgaaggtgccggcgtggatgagctggtctactgcgcggagcccaagttc
gacggcacggcgctgaatctgcgcttcgaagccggcgtcatggtgcgtgccaccactcgt
ggcgacggcatcaccggcgaggacattaccgccaacgcgcgcaccatccgcaatctgccg
ctgcgcctggccaccgaccatccgccggcgttcatcgagatccggggcgaggtcgtgctc
gcccgctcgcgtttcaacgcgctcaacgcacggctggaagcacagggccaaaagaccttc
gtcaacccgcgcaacgccgccgcgggcagcctgcgccagctggattcgcgcatcacggcc
acgcgtccgctggccttcatgggctacggcatcggccgggtcgacggcgccgaactcacc
gacagtctcttcgaacagctgcgattgctggcggactggggtttcaccatcagcccgtat
gtggatcgcgtcaccggattgcagggttgtcgggcttactacgaagccatggccgcgcgc
cgcgccgagctggacatcgagatcgacggctgtgtgttcaaggtcgacgacggtccgagc
cgcgacgagctgggtttcgtcgcgcgtgcgccgcgctgggcgattgcgcgcaagttcccg
gccgaggaagccaccaccacgctcaacagcgtcgagttccaggtcgggcggaccggtgcg
ctcacgccggtggccaagctcgaaccggtcttcgtgggcggtgtgaccgtctccaacgcc
acgctgcacaacatggacgagatcgagcgcaagggtattcgtatcggcgatcgcgtggtg
gtgcggcgggccggcgacgtaataccggagatcaaggccgtcgccgcgcgtggtgcccgg
gccacagcgatcgagctgccgtcggcctgtccggtctgtggttcggcggtcgagcgggtc
gagggcgaggccgtggcgcgctgtaccggcgggctggtgtgcgcggcgcagcgacgcgag
gcactcaagcacttcgcctcgcgcaacgcgctcgacatcgaaggcctcggcgagcgccag
atcgaggcctttgtcgccgaggggctgctgcattcgccggccgacatcttttcgctggcc
gaatatcgcgacgccctggtcgaacgcgaaggctacggcgagaaatccgtggccaacctg
ctggcctcgatcgaggcggccaagcagaccacgctggaacgcttcatcttcgccctcggc
attcgcgaggtcggccagaccatggcgcgcgacctggcgcgtcacttcggcacgctggag
gcgctgagagccgaggcgcagcgttatcaccagcggctggccgatgtacaggcgcagcat
ccggacaacaaggccgcccgcgatcgtgcgatggtcgccgagggtctgcaggcggtgccg
ggtgtcggcgcgcgcgtggcacagtcgattgccgatttcttcaccgagccgcgcaacatc
gcggtcatcgacgccctgatcgaggccggcgtgcactggccgagcgtggataccgatgcc
gccgcccagcctctggcgggccggaccttcgtgctgaccggcagcatggcgtcactgaca
cgcgacgaagccagcgaccgtctggaggcactcggcgcccgagtgacctcgagcgtgtcg
aaaaaaaccgattacgtggtggctggcgagcgcgccggcagcaagcgcgacaaggctgaa
aagctgggtgtggcgattctcgacgaggctggcctgcgggcattgctcgacgaacacgag
ggctga
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