KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111955569
Entry
111955569         CDS       T05762                                 
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic protease-activating factor 1
  KO
K02084  apoptotic protease-activating factor
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04115  p53 signaling pathway
salp04210  Apoptosis
salp05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:salp00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    111955569
   04115 p53 signaling pathway
    111955569
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    111955569
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st NB-ARC WD40_CDC20-Fz Beta-prop_EML_2 APAF1_C Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_CAF1B_HIR1 APAF-1-like_WHD Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st RMC1_N Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 PEP5_VPS11_N eIF2A Ge1_WD40 WD40_like Beta-prop_HPS5 AAA_16 Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_WDR75_2nd nSTAND1 NACHT Beta-prop_WDR11_2nd NPHP3_N Beta-prop_SPT8 AAA_22 WDR54 WD40_RFWD3 CARD
Other DBs
NCBI-GeneID: 111955569
NCBI-ProteinID: XP_023831549
LinkDB
Position
LG3:352984..429340
AA seq 1259 aa
MAMMEEGARSCLLQSRSSLEQDIRASYLMDHMISDGVLTVQGVLSEGGVPQRPVVFVSRP
ALVNRVREKLYHLQKEPGWVTVFGMAGSGKSVLAAEAVRDHALITVQAVLSEGGVPQRPV
VFVSRPALVNRVREKLYRLQKEPGWVTVFGMAGSGKSVLAAEAVRDHALITECFPGGVHW
LSIGQLDRSDLLVRIQSLCFRLEQQSQEKDPXSSVHRPPGSLEEAKERLRFLMLRRYPRS
LLILDDIWDSSVLKAFDIQCRVLLTTRDRSLADCVSGSKSEVAVESGLEEGQALEILALY
VNGKPQRLPEQARSIVRECKGSPLVVSLIGALLREFPDRWAYYLHTLQQKKFKRIRKSSS
YDYDALDQAMXASIQVLSEEHRDCTLTSTVLEKDVKVPAQVLSVLWDLEPEEVXDVLQDF
VNKSLLVRDCHHRPYLYYLHDLQLDFLAEMNRSGLESLHTKVVRQYQQRYSQGPPTSGDE
ECLYWFRFLTYHMAKANLTQELYSLMFSLDWVRTKAQIMGPAHLINDYVEYGAVLDKENS
EVRGHFQEFLSLNGHQLEQRPFPDVVQLALSQPDSSEVYRQALLQAQERATTGGLYLDWV
NKSSLKSLSRLVVQPHQGSIYSACFSHDGTNIASCGSSKTLRVFKSTSGEKLLEIQAHDD
EVLCCAFSPDDRLLATCSSDRKVKVWNVERGTLMRVFEDEHEEQVNHCQFTNTSLRLLLA
TCSNDKFMNTKLWNINKPSSQNTMFGHLEPVNHCCFSPDDAYLSTSSNDGTLKLWEVSSA
NEWKSIDVADMFPEQSEQTEVMVKCSTWSADGRTIICAARNAVFVFDVETAAMLLEIRTS
RLSTVQYCHACPSSNLVAIALSHYAVELWDIETSKKMADCSGHLSWVHGVQFSPDGSLLL
SCSDDQTVRVWETNKVHTSSAVCLKRDSDVLFNNGDITVVAADNCNRLQVRNGRTGAVMF
QSEDQESRIRCTAICLQTSAVGLGREDGTIQVLEVPSGTSLATLQGHTRAVLHCQFTPEG
HTLITSSEDTTIRVWRWRTGECVVLEGHKEQVRCFSLLTTSPSSETHLLSWSFDGTIKVW
DMSSGERLQDLVCHQGAVLACDVSPDGQLFATTSADKTAKVWSSASWECVRLLNGHQDCV
RSCRFSWDGRRLATGDDNGEIRLWNVKDGSLLKICSRDNKDAMDSLHGGWVTDLHFSPDN
TVLLSTGGYIKWWNVEKGEALQTFYPTGTNLKRIHVSPDFSTFVTIDNIGILYILKKVE
NT seq 3780 nt   +upstreamnt  +downstreamnt
atggcgatgatggaggaaggggcgcggagctgcctgcttcagtcacgctccagcctggag
caggacatcagggcttcctacctgatggatcacatgatcagtgacggcgtgctgacggtc
cagggggtgctgagtgagggcggcgtgcctcagagacctgtggtgtttgtgagccggcca
gccctggtgaaccgggtcagggagaagctctaccacttgcagaaggagcccggctgggtc
actgtgttcggcatggccggctccggcaagtctgtcttggctgcggaggcagtccgagac
cacgcactcatcacagtccaggcggtgctgagtgagggcggcgtgccccagagacccgtg
gtgtttgtgagccggccagcactggtgaaccgggtcagggagaagctctaccgcttgcag
aaggagcccggctgggtcactgtgttcggcatggccggctccggcaagtctgtcttggct
gcggaggcagtccgagaccacgcactcatcacagagtgttttccaggaggagtccactgg
ctgtccataggccagctggaccggtctgacctgctggttaggatccagtcactgtgtttc
cgcctggagcagcagagccaggagaaagaccccwygtcctcmgtccaccggcctcctggc
tctctggaggaggccaaggagcgactacgcttcctcatgctccgtcgttaccccaggtcg
ttgctgatactggatgacatctgggacagctcggtgctcaaggcctttgacatccagtgt
cgagtactgctcaccacccgagacagaagcctagccgactgtgtcagcggttctaagtct
gaggtggcagtggagagtggtctggaggagggtcaggccttggagatcctcgccctgtat
gtcaacgggaaaccccagagactcccagaacaggcccgcagcattgtccgagagtgcaaa
ggctcccccttggtggtgtccctaatcggggccctgctgcgggagttcccggaccgctgg
gcctactacctgcacacgctccagcagaagaagttcaagcgtatccgtaagtcgtcttcg
tatgactacgatgcccttgaccaggccatgngtgccagcatccaggtcctgtctgaggaa
cacagggactgtacattgacctccaccgtgctggagaaggacgtcaaagtacctgcgcag
gttctgtcggttctgtgggatctagaaccggaggaggtgnnagacgttctccaggacttt
gtgaacaagtccctactggtccgtgactgtcaccaccggccctacctctactacctccat
gacctccaactggacttcctggctgagatgaaccgctctggtctagagagcctccacacc
aaggtggtgcgtcagtaccagcagcgctacagccagggtccccccacctcaggagatgaa
gagtgcctctactggttcagattcctcacctaccacatggccaaggccaacctcacacag
gagttgtactctctgatgttctctctggactgggtcagaactaaagctcagattatggga
ccggctcatctcatcaatgactatgtggagtacggcgccgtactggacaaagagaacagc
gaggtgcggggccacttccaggagttcctgtctctgaacggccaccagttggagcagcgt
ccgttccctgacgtagtgcagctggccctgtcacagccagactcctctgaggtgtaccgc
caggccctgctgcaggcgcaggagagggccaccacagggggactctaccttgactgggtg
aacaaaagtagtctgaagagcctgtctcgtctggtggtccagccccaccagggatccatc
tactctgcctgcttctcccacgacggcaccaatatcgcctcctgtggctccagcaagaca
ctgcgagtgtttaagagcacctctggggagaagctgctggagatccaggcccacgacgat
gaggtgctctgctgcgccttctccccggatgaccgtctcctagcaacctgctcaagtgat
aggaaggtcaaggtttggaacgtggagcgtgggactctgatgagggtgtttgaggacgaa
cacgaggagcaggtcaaccattgtcagttcaccaacacaagcttacgcctcctactggcc
acctgctccaacgacaagttcatgaacaccaagctgtggaacatcaataaaccctcctcc
cagaacaccatgtttggtcatttggagcctgtcaatcactgctgtttctcccctgatgac
gcctacctctccacctcttccaacgacggaaccctgaagctgtgggaggtgtcctcggcc
aatgagtggaagtccatagacgtggcggacatgttcccggagcagagcgagcagacggag
gtcatggtgaagtgcagcacctggtcagcagacggcaggaccatcatctgtgctgccagg
aacgcagtctttgtgtttgatgtagagacggcggccatgttgttggagatccggaccagt
cgtctgagcacggtgcagtactgtcacgcctgtcccagcagcaacctggtggccatcgca
ctgtcacactatgctgtggagctgtgggacattgagaccagtaagaagatggctgactgt
agtggtcatctgagctgggtccatggagtccagttctcccctgacggatctctactgctc
tcctgttctgatgatcagaccgtcagggtgtgggagactaataaagtccacacctcctcg
gctgtctgtctgaagagggactctgacgtgctctttaacaacggtgacattactgtggtc
gccgccgacaactgcaacagactgcaggtgaggaatgggaggaccggagcggtgatgttc
cagtcagaggaccaggagtctcgtatccgctgcactgctatctgcttacagacctcagcc
gtggggctgggacgagaggatgggacgatacaggtgttggaggtgccgtcagggacctct
ctagccactcttcagggtcacaccagggcagttctccactgccagttcaccccggaggga
cacacactcatcacctcctctgaggacaccaccatacgggtgtggaggtggaggacaggt
gagtgtgtggttctggagggccacaaggagcaggtcagatgtttctctctgctcacgacc
tcaccctcctcagagacacatctcctcagctggtcctttgacggcaccatcaaggtgtgg
gacatgtctagtggtgaacggctgcaggacctagtgtgtcaccagggggcggtgctagcc
tgtgacgtgtcgcctgacggacagctcttcgccaccacctccgctgacaagactgctaag
gtgtggagtagtgcatcgtgggagtgcgtgcgcctgttgaacggccaccaggactgtgtc
cgcagctgccgcttctcttgggacggccggcgcctagcaaccggtgacgacaacggagag
atacggctgtggaacgtgaaggatggatctctgcttaagatctgttcccgtgacaacaag
gacgccatggactctctgcacggaggctgggtgaccgacctgcacttctccccagacaac
actgtgctgctgtctacaggaggatacattaagtggtggaacgtggagaaaggagaggcc
ctccagaccttctacccgacaggaaccaatctgaaaaggatccacgtgtcacctgacttc
tccaccttcgtcaccatcgacaatatcggaatcctctacatcctgaagaaggtggaatga

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