KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111964003
Entry
111964003         CDS       T05762                                 
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04010  MAPK signaling pathway
salp04137  Mitophagy - animal
salp04141  Protein processing in endoplasmic reticulum
salp04210  Apoptosis
salp04217  Necroptosis
salp04621  NOD-like receptor signaling pathway
salp04622  RIG-I-like receptor signaling pathway
salp04920  Adipocytokine signaling pathway
salp05132  Salmonella infection
salp05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    111964003
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    111964003
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    111964003
  09143 Cell growth and death
   04210 Apoptosis
    111964003
   04217 Necroptosis
    111964003
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    111964003
   04622 RIG-I-like receptor signaling pathway
    111964003
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    111964003
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    111964003
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    111964003
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    111964003
   04121 Ubiquitin system [BR:salp04121]
    111964003
Enzymes [BR:salp01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     111964003
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     111964003
Ubiquitin system [BR:salp04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    111964003
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-C3HC4_4 zf-RING_5 zf-RING_4 zf-C3HC4_2 zf-RING_6 zf-C3HC4_5
Other DBs
NCBI-GeneID: 111964003
NCBI-ProteinID: XP_023843405
LinkDB
Position
LG5:complement(17925158..17957997)
AA seq 526 aa
MARISLPSLDSSLPGIPQSVLAVSMEAKYQCQQCHQVLRKPVQAQCGHRFCVHCFKLLTS
SGPKPCEACRQEEIYEEPQSILNSNEAFPDNAAGREIASLPAKCISEGCSWTGCIKEYEA
QHEGKCEYERVPCETCQVLILRSEKERHNERECEARTLNCKYCKVSFNFKEIKAHDEICQ
KFPMQCKDCGKKKIPREKFLDHSRSCAKSKTACPFSEVGCKVVIDNGKHSDHEQTSVMEH
MRLILATMPLVRLQRPEAPGLGEWQEDSGLGLYRAPEDGATATAAIDGGGAAASGQTFGL
DHKVRALENIVCVLNREVERSSLTLEAFSRQHRLDQDKIENLGNKVRQLERTLTMRDLQL
AETDQTLRELQFCTFDGVFVWKIADFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLY
LNGDGTGRGTHLSLFFVVMRGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVSSTS
FQRPISEMNIASGCPLFCPLAKLAGKSSYLRDDTIFIKAIVDLTGL
NT seq 1581 nt   +upstreamnt  +downstreamnt
atggcccgcatatctctaccctctttggactcctcccttccagggataccccagagtgtg
ctggctgtttccatggaagctaagtaccaatgccagcagtgtcaccaggtcctgaggaag
ccagtccaggctcagtgtggacatcgtttctgtgtccattgtttcaaactgctcaccagc
tccggcccaaagccctgtgaagcctgtcgacaggaggagatatatgaggagccacagtcc
attctcaatagtaatgaggcttttccagacaatgcagctggtagagaaattgccagccta
cctgccaaatgtatcagtgagggatgctcttggactggttgcataaaagaatatgaggca
caacacgagggcaagtgtgagtatgaacgagtaccatgtgaaacctgccaggtccttatc
ctgcgcagtgaaaaagagaggcataatgagagagaatgtgaagcaaggacattgaactgc
aagtactgcaaagtctccttcaacttcaaggaaatcaaggctcatgatgaaatctgccag
aagtttcccatgcagtgcaaggactgtggaaagaaaaagatcccacgggaaaagtttcta
gatcacagcagatcctgtgccaagtctaagactgcgtgtccgttcagtgaggtcggctgc
aaggttgtgattgataatgggaagcacagtgaccacgagcagactagtgtcatggagcac
atgcgtctgatcctggcgacgatgcctctggtgaggcttcagcgtccagaggccccaggg
ctgggggagtggcaggaggactctgggctgggcctgtaccgcgctcccgaggatggagcc
acagctactgcagccatagatgggggaggagccgctgcctccggacagacctttggtctt
gaccacaaggtgagagcactggagaatatagtgtgtgtactgaacagggaagtggagagg
agttctctcactttagaggccttctcgcggcaacatcgtctagaccaagacaagattgag
aacctcggcaacaaggtacgtcaactagagcgtactctcaccatgcgggacctacaactg
gctgagacagaccagactctgagagaactccagttttgcacctttgatggtgtctttgtc
tggaagatcgccgacttctcacgccgccgccaggacgctgtggccgggcgaacacccgct
atgttctcaccagcattctactcaagtaaatatggctataagatgtgtctgagactgtat
ctgaatggggacggaacgggtcgagggactcacctttctcttttcttcgtggtgatgagg
ggcaagtgtgacgctcttctcaaatggcccttcagtcagaaggtgacactgatgctgctg
gatcagaataacagggagcatatcattgatgccttccggcctgatgtaagctccacctct
ttccagcgaccaatcagtgagatgaacatagccagtggctgcccactcttctgcccattg
gctaaactggcaggcaagagctcctatcttagggatgacaccattttcatcaaggccatt
gtagacctcacaggcctgtag

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