Salvelinus sp. IW2-2015 (Arctic char): 111965401
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Entry
111965401 CDS
T05762
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04010
MAPK signaling pathway
salp04020
Calcium signaling pathway
salp04510
Focal adhesion
salp04518
Integrin signaling
salp04519
Cadherin signaling
salp04540
Gap junction
salp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
111965401
04020 Calcium signaling pathway
111965401
09133 Signaling molecules and interaction
04518 Integrin signaling
111965401
04519 Cadherin signaling
111965401
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111965401
04540 Gap junction
111965401
09142 Cell motility
04810 Regulation of actin cytoskeleton
111965401
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
salp01001
]
111965401
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
salp04090
]
111965401
Enzymes [BR:
salp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
111965401
Protein kinases [BR:
salp01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
111965401
CD molecules [BR:
salp04090
]
Proteins
111965401
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
VEGFR1-3_N_Ig-like
Ig_2
ig
Ig_VEGFR-1-like_5th
V-set
C2-set_2
PKD
RIFIN
VEGFR-1-like_Ig-like
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
111965401
NCBI-ProteinID:
XP_023845358
LinkDB
All DBs
Position
LG6.1:complement(28921912..28971382)
Genome browser
AA seq
1096 aa
AA seq
DB search
MRSVRVCTLHLTTILTALLHFCPEFCCLEISPSNSEVVMAAGDSMTITCSGWGTVEWRFK
RDDNVPYFGVENQNTTSVLILENVTWSQTGVYVCAEAWTDKTIEVAVFVPDPDVWFIESF
HGMVTKTSEEGIIPCVVTNPQINVTLYERDSDMHLKGVYIPSEGYRAPLEDRTYVCRGEL
NGEEKESQAFYVFSIAVPETIDAYINASKTVLKQGEPLTVNCTVQGVDLVSFSWDYPNRD
VDSIEPLTDILSSQKMRSRLIVSKVTLANTGQYACHVHEGVQDQRATANINITILEQGFV
ELRSVQDRNVSAQLHQNVELRVEIEAYPPPRVRWTKDDATVNGDNVVITRQEHETRYFST
LTLVRIRTEQKGLYTVHVANGDDAKKLTFDLEVKVPPQITDLSDHHLPGKRHAVTCVAEG
VPSPTIQWFSCDSMLKCSNRSTVWQPLVSDPETLSVQTNVSFNESRKVGQVRSQVIFHKP
QQVSVRCEASNERGLRRRDVKLVSSTFFSQVAVLAAVLALVVIVIISIIILIAVWRKKPR
YEIRWKVIESVSLDGHEYIYVDPIHLPYDLAWEMPRDSLVLGRTLGSGAFGRVVEATAYG
LGHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYLVT
EYCRYGDLVDYLHKNKHTFLQYYLEKNQEDSGCRISGGSTPLSQRKGYVSFGSECDGGYM
DMSKDEPTVYVPMQELKDTIKYADIQPSPYESPYQHDHYQEQDQTTMDPAPFISDSTTLS
YTDLIGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDSNYIS
KGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYSALKR
GYRMAKPNHATDEVYEVMQKCWDEKHEKRPEFSFLVHTMGNMLTDSYKKRYCQVNDEFFK
SDHPAVVRTKPRLSSPFPTPAITPSTTPDTLQDLNPCPLTGDFRSEADREEVTTSYNDYI
IPIPDPKPQEEVFSEANXMPMESPASSLALEDDEADSISQETAEADTIPEXEDLHANQAL
IPLESSGTPEVEDSFL
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgtcagagtatgcactctccatctgacaaccattcttacagctcttttacac
ttctgtcctgagttctgttgcctggagatctcccctagcaacagtgaagttgtcatggca
gcgggtgactccatgaccattacctgttccggctgggggacggtcgaatggaggttcaag
cgggatgacaacgttccctattttggagtggagaaccagaacacgaccagtgttctcatt
ctggaaaatgtgacgtggagccaaacgggagtatatgtctgtgccgaggcttggactgac
aagactatagaggtggcagtctttgtgccagaccctgatgtgtggttcattgagagtttc
cacggcatggtgaccaagaccagcgaggaggggatcatcccgtgtgtggtcaccaacccc
cagatcaacgtcaccctctacgaaagagacagtgacatgcacctgaagggggtctacatc
ccaagtgagggctacagggcacccctggaggacaggacctatgtgtgccgaggagagctg
aacggggaggagaaagagtcccaggctttctacgtcttcagcattgctgttccggagacg
atcgacgcctacatcaatgcgtctaagacggtgctgaagcagggcgagcctctgacagtg
aactgcacggtgcagggagtggacctggtctccttctcctgggactatcccaatagagac
gtggactccattgagcctctgactgacatcctatcatcccagaagatgcgctcacgcctc
atagtctccaaggtgacgctggccaacacgggccagtacgcgtgtcatgtccacgagggt
gtccaggaccagagagccacagccaacatcaacatcaccatccttgagcaaggcttcgtg
gagctgaggtccgtccaggatcgtaaygtctcggcccagctgcaccagaacgtagagctg
agggtggagatygaagcttacccccctccacgtgtccgctggaccaaagatgatgccacg
gtcaacggggacaacgtcgtaatcaccaggcaggagcatgagaccaggtacttcagcacg
ttgaccctggtgaggatcaggacagaacagaaaggcctctacaccgttcacgtcgccaac
ggagatgaygccaagaaattgacctttgatctagaggtcaaagtcccccctcagatcaca
gacctgtcggaccaccacctccctgggaagaggcatgccgtgacctgtgtggctgagggg
gtaccttcccccaccatccagtggttcagctgtgacagcatgctcaagtgcagtaaccgg
agcacagtgtggcagcccctagtgtcagaccctgagaccctgagcgtccagaccaacgtc
agcttcaacgagagccgtaaggtgggccaggtccgcagccaggtcatcttccacaagccc
cagcaggtgagcgtccgctgcgaggccagcaacgagagaggactccgcaggagggacgtc
aaactggtgtccagcactttcttctcccaggtggcagtgttggctgcggttctagccctg
gtagtcatcgtcatcatctccatcatcatcctcatcgctgtgtggaggaagaagcctcgc
tatgagatcaggtggaaggtgatcgagtcagtgagtctggacggacatgagtacatctac
gttgaccccatccatctgccctatgaccttgcctgggagatgcctcgagacagcctggtg
ttgggtcgtactcttgggtccggagcattcggcagggtggtcgaagcgaccgcgtatggt
ctcggtcattcccagtccagcacgaaagtggcagtgaaaatgctcaaatccacggccagg
aggagtgagacccaggctctaatgtcagagctgaagatcatgagccacctggggcctcac
ctcaacattgtcaacctgctgggggcctgcaccaaacaaggccctctctacctggtgaca
gagtactgtcgctatggagacctggtggactacttacacaagaacaagcacacgttcctg
cagtactaccttgagaagaaccaggaggactctggctgccgcatctctggagggagcacm
cctctcagccagaggaaaggctacgtgtcatttggcagtgagtgtgatggtggttacatg
gacatgagtaaggacgagcccacagtgtacgtccccatgcaggagctgaaagacaccatc
aaatacgctgacatccagccttctccctatgagtctccctatcagcacgaccattaccag
gaacaagaccagaccacaatggaccctgccccgttcatcagtgactctaccaccctcagc
tatactgacctcatcggcttcagctaccaggtggccaaaggcatggagttcctcgcctcc
aagaactgtgtccatcgtgacctggccgccaggaacgtgttgatctgtgaggggaaactg
gtgaagatctgtgactttggcctagccagagacatcatgcacgattccaactacatctcc
aaaggcagcacatttctgcccctgaagtggatggccccagagagtatcttccataacctg
tacaccaccctgagtgacgtgtggtcctacggcatcttgctctgggagatcttcaccctt
ggaggaaccccttaccctgaccttcctatgaatgagctgttctacagtgccttaaagaga
ggctatcgcatggccaaacctaaccacgccacagacgaagtttatgaagtcatgcagaag
tgctgggatgagaagcatgagaagaggccagagttctcctttctggtgcacaccatgggg
aacatgctcactgacagctataaaaagagatactgccaagtcaacgacgagttcttcaag
agtgaccacccggccgtggtccgaaccaaacccaggctctcctcccccttccccacccca
gccatcaccccctccaccacccctgacaccctccaggacctcaacccctgccctctaact
ggagactttagatcggaggcagatagagaggaagtgacgacctcctacaatgactacatc
attcccattccagaccccaagcctcaggaggaagtcttctccgaggccaacrgcatgcca
atggaaagccccgcgagctctctggctctggaggatgacgaggctgattccatctcccag
gagacagcagaggcagacaccattccagaagasgaggatctccatgccaaccaggctctg
attccactggaatcttctggaacaccggaagtggaagacagcttcctrtag
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