Salvelinus sp. IW2-2015 (Arctic char): 111969202
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Entry
111969202 CDS
T05762
Name
(RefSeq) oxysterols receptor LXR-alpha isoform X1
KO
K08536
liver X receptor alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03320
PPAR signaling pathway
salp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111969202
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
111969202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111969202
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
salp03310
]
111969202
Transcription factors [BR:
salp03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
111969202
Nuclear receptors [BR:
salp03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
111969202
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Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
111969202
NCBI-ProteinID:
XP_023850918
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Position
LG10:5836582..5868040
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AA seq
441 aa
AA seq
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MKHEGNLLPLELPHHAGFSSPPQKGPSSLAEKSSPLLMEPSNIKADPAGDMPANTEGQRV
KRKKGPAPKMLGNEVCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKSAQYSCKNNGRCEM
DMYMRRKCQQCRLRKCREAGMLEQCVLSEEQIRVKKMKKNEEETARTSAVVTPTPVPEVV
PLAPEQLEMIEKLVAMQKQCNKRSFIDRPKVTVIPWPQSQDPQNREARQQRFAHFTELAI
MSVQEIVDFAKQLPGFLELTREDQIALLKTSTIEIMLLETSRRYNPAIESITFLKDFSYN
KEDFAKAGLQLEFINPIFEFSKGMNDLHLDEAEYALLIAINIFSAGQRSSGMLVWNRAHM
QDRPNVQDHELVERLQQPYVDALRSYIMIKRPNDHLMFPRMLMKLVSLRTLSSVHSEQVF
ALRLQDKKLPPLLSEIWDVHE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgaagcatgagggcaacctcctccccctggaactaccccaccatgcagggttttccagc
cccccccagaaagggccttcctcactagctgagaagagcagcccgctgctcatggagccc
agcaacatcaaggccgaccccgccggcgacatgcctgccaacacagagggtcagcgggtg
aagaggaagaagggtccagcacccaagatgctgggtaacgaggtgtgcagcgtgtgcggg
gacaaggcctcaggcttccactacaacgtgctgagctgcgagggctgcaagggcttcttc
cgccgcagcgtcatcaagagcgcccagtactcgtgcaagaacaacggccgctgtgagatg
gacatgtacatgcgccgcaagtgccaacagtgccggctgcgcaagtgccgtgaagcgggc
atgctggagcaatgcgttctctcagaggagcagatccgagtgaagaaaatgaagaagaac
gaggaagagactgcacgcacgtctgccgtggtgacccccaccccggtgccggaggtggtc
ccgctggcgcccgagcagttggagatgatcgagaagctggtggccatgcagaagcagtgc
aacaagcgctcgttcatcgaccggcccaaagtcacggtgattccgtggccccagagtcag
gacccccagaacagggaggcgcggcagcagcgctttgcccacttcaccgagctggccatc
atgtcggtccaggagatagtggactttgccaagcagttgcctggcttcctagagctcacc
agagaggaccagattgccctgctgaagacctcaaccattgagatcatgctgctggaaaca
tcgcggagatataaccctgccattgagagcatcacgttcctgaaggacttcagttataac
aaggaggattttgccaaagcagggctgcagttggagtttatcaaccccatctttgagttc
tccaagggcatgaacgacctgcacctggacgaggcggagtacgctctgctcatcgccatc
aacatcttctctgcaggtcagaggtcaagtggtatgctagtgtggaacagagcccatatg
caagaccggcccaatgtgcaggaccatgaactggtggagcgactgcagcagccgtacgtg
gacgcacttcgttcttacatcatgataaagagaccaaacgatcacctgatgtttccacgc
atgctcatgaagctggtcagcctccgcaccctcagcagcgtccactctgagcaggtcttc
gccctacgcctccaggacaagaagctcccgccgctgttatctgaaatctgggacgtccac
gagtaa
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