Salvelinus sp. IW2-2015 (Arctic char): 111974002
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Entry
111974002 CDS
T05762
Name
(RefSeq) oxysterols receptor LXR-alpha isoform X1
KO
K08536
liver X receptor alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03320
PPAR signaling pathway
salp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111974002
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
111974002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111974002
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
salp03310
]
111974002
Transcription factors [BR:
salp03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
111974002
Nuclear receptors [BR:
salp03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
111974002
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Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
111974002
NCBI-ProteinID:
XP_023857258
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Position
LG15:50325738..50347682
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AA seq
469 aa
AA seq
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MSTLSATDITDVGHGEVFDGAPELQLDCLCSGDDRSSAEMKHEGNLLPLEPPDHVGFSSP
PRKGPSSLAEKSSPLPMEPSDIKADPAGSMPANTEGQPVKRKKGPAPKMLGNEVCSVCGD
KASGFHYNVLSCEGCKGFFRRSVIKSAQYSCKNNGRCEMDMYMRRKCQQCRLRKCREAGM
LEQCVLSEEQIRVKKMKKNEEETARTSAVVTPTPVPEVVPLAPEQLEMIEKLVAMQKQCN
KRSFIDRPKVTVIPWPQSQDPQNREVRQQRFAHFTELAIMSVQEIVDFAKQLPGFLELTR
EDQIALLKTSTIEIMLLETSRRYNPAIESITFLKDFSYNKEDFAKAGLQLEFINPIFEFS
KGMNDLHLDEAEYALLIAINIFSAGQRSSDRPNVQDHELVERLQQPYVDALRSYIMIKRP
NDHLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtccacactgtctgcgactgatatcacagatgttggtcatggtgaggtatttgacggg
gccccagagctgcagctggactgcctctgcagtggtgacgaccgcagcagtgcagaaatg
aagcatgagggcaacctcctccccctggaaccacctgaccatgtagggttttccagcccc
ccccggaaagggccttcctcactagctgagaagagcagcccactgcccatggagcccagc
gacatcaaggctgaccccgccggcagcatgcctgccaatacagagggccagccggtgaag
aggaagaagggtccagcccccaagatgctggggaacgaggtgtgcagcgtgtgtggggac
aaggcctcaggcttccactacaatgtgctgagctgcgagggctgcaagggcttcttccgc
cgcagcgtaatcaagagtgcccagtattcgtgcaagaacaacggccgctgtgagatggac
atgtacatgcgccgcaagtgccagcagtgccggctgcgcaagtgccgtgaagcgggcatg
ctggagcaatgcgttctctcagaggagcagatccgagtgaaaaagatgaagaagaacgaa
gaagagactgcacgcacgtctgcggtggtgacccccaccccggtgccggaggtggtcccg
ctggcgcccgagcagttggagatgatcgagaagctggtggccatgcagaagcagtgcaac
aagcgctcgttcatcgaccggcccaaagtcacggtgattccgtggccccagagtcaggac
ccccagaacagggaggtgcggcagcagcgctttgcccacttcactgagctggccatcatg
tcggtccaggagatagtggactttgccaagcagttgcctggcttcctagagctcaccaga
gaggaccagattgccctgctgaagacctcaaccattgagatcatgctgctggagacatcg
cggagatacaaccctgccattgagagcatcacgttcctgaaggacttcagttataacaag
gaggattttgccaaagcagggctgcagttggagtttatcaaccccatctttgagttctcc
aagggcatgaacgacctgcacctggacgaggcggagtatgctttgctcatcgccattaac
atcttctctgcaggtcagaggtcaagtgaccggcccaatgtgcaggaccatgaactggtg
gagcgactgcagcagccgtacgtggacgcacttcgttcttacatcatgataaagaggcca
aacgatcacctgatgtttccacgcatgctcatgaagctggtcagcctccgcaccctcagc
agcgtccactctgagcaggtcttcgccctgcgcctccaggacaagaagctcccgccgctg
ctatctgaaatctgggacgtccacgagtga
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