Salvelinus sp. IW2-2015 (Arctic char): 111981070
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Entry
111981070 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111981070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111981070
Spliceosome [BR:
salp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111981070
Complex C
U5 SnRNP specific factors
111981070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
111981070
NCBI-ProteinID:
XP_023867971
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All DBs
Position
LG20:complement(71657761..71671498)
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AA seq
969 aa
AA seq
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METDLYDEFGNYIGPELDSDEDDDLEADDRDVDEADEDDDDEPADADEDVPGMEVVLHED
KKYYPTAEEVYGPEVETLVQEEDAQPLTEPIIKPVRNKQFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSFLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAVTICINKVDRLIVELKLPPTDAYYKLRHIVDEVNAMLSTYSTDENLVVSP
LLGNVCFASSQYCVCFTLGSFAKIYSDTYGNINYTEFAKRLWGDIYFNPKTRRFTKKAPT
SNTQRSFVEFVLEPLYKILSQVVGDCDTSLPRVLDELGIHLVKEELKLNIRPLLRLVCKR
FFGEFTGFVDMCVQHIPSPRXGAKNKIEHSYTGGLDSDLGRHGECDPDGPLMCHTTKMYS
TEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWINVARYQIEVNR
VPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPKM
LDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFC
ETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYD
WDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEP
IRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCV
SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHH
WQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAK
QDVVLNYPM
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggagacggacctgtatgacgagtttgggaactacattggkccagaactagactctgac
gaggatgatgatctggaggcagatgacagagatgtggatgaggctgatgaggatgatgat
gatgagccagctgatgctgatgaagatgtcccaggaatggaggtagttctgcacgaggat
aagaaatactatcctacagcagaggaagtgtacgggccggaggtggaaactttagtccag
gaagaggatgcacagcccctcacagaacccatcatcaagcctgtaaggaacaagcagttc
actctgatggaacaggagctaccttccactgtttatgacatggagttcctggctgaccta
atggacagtcccgagctgatccgtaacgtcaccctgtgtggccacctgcatcacggcaag
acgtgtttcgtggactgcctgattgaacagacacacccagagatcaggaagagagacgac
atggatctccgttacacagatatcctcttcactgagcaggagcgaggggttggtatcaag
agcacccccgtcacaatggttcttccagactccagaggcaaatccttcctcttcaacatc
atggacacaccaggccacgtcaacttttcggatgaggtgaccgcaggcatccgactctct
gacggcatcgtgcttttcatcgacgcagcagaaggggtgatgttgaacacagagcgtctg
atcaagcacgcagtccaggagcgtctggccgtcaccatttgcatcaacaaggtggaccgc
ctcatcgtggagctcaagctgcccccgacagacgcctactacaagctacgccacatagtg
gacgaggtcaacgccatgctcagcacctactctacagatgagaacctggtggtgtctcct
ctcttggggaacgtgtgtttcgccagctctcagtactgcgtttgcttcaccctgggctcc
ttcgccaagatctactctgacacctacggtaacatcaactacacagagtttgccaagagg
ctgtggggagacatttacttcaaccccaaaacacgcaggttcactaagaaagcccccacc
agtaacacccagcgtagctttgtggagtttgtgttggagcctctgtacaagatcttatcc
caggtggttggtgactgtgacacatctctgcctcgggtgctggatgagctgggcatccac
ctggtcaaagaggagctgaagctcaacatcagaccgctactcaggctggtctgtaagcgc
ttctttggagagttcaccggcttcgtggacatgtgcgtgcagcacatcccctcaccaagg
nggggcgccaagaacaagatagagcacagctacactggaggactggactcggacctgggg
aggcatggagaatgcgaccctgatggtcctctgatgtgccacaccactaagatgtacagt
actgaggacggggtgcagttccatgcgttcggccgggtgctgagcggtaccatccaggcg
ggccagccagtcaaggtgctgggagagaactacactctggaggacgaggaggactcgcaa
gtctgcacggtgggacgtctctggatcaacgtcgccaggtaccagatagaggtgaaccgt
gtgcctgccggtaactgggttctcattgagggctgtgaccagcccatcgtcaagaccgcc
accatcaccgagccccgrgggaacgaggaggcccagatcttccggccgctcaagttcaac
acggcgtctgtcatcaagatcgctgtggagccagtcaacccgtcagagctgcccaagatg
ttggacggactgcggaaggtcaataagagctacccctccctcaccaccaaggtggaggag
tcaggggaacatgtgatcctgggyactggggaactctacctggactgtgtcatgcacgac
ctgcggaagatgtactctgagatcgacatcaaggtggctgaccccgtggtgaccttctgt
gagacggtagtggagacctcgtctctcaagtgctttgccgagacgccgaacaagaagaat
aagatcaccatgattgccgagccgctggaaaaaggcctggctgaggacatagagaacgag
gtggtgcagatcacatggaacaggaagaagctgggagagtttttccagaccaagtatgac
tgggatctgctggctgccaggtctatctgggcctttgggcccgacaccaccgggcctaac
atcctggtagatgacaccctgccttctgaggtggacaaggctctgctgggctcggttaag
gacagcatcgtccagggcttccagtggggcaccagggaggggcctctgtgtgacgaacct
atcagaaacgtgaagtttaagatcctggatgcggtcatagcgcaggagcctctacacaga
ggaggaggacaggtcatccccacagccaggagagtggtgtactctgccttcctcatggcc
acccccaggttgatggagccctattactttgtcgaggtccaggccccagctgactgtgtg
tctgctgtgtacacagtactggccagacggagaggtcatgtgacccaggacgcccccatc
cccgggtctcccctctacaccatcaaggccttcatcccagccatcgactcgtttggcttc
gagactgacctgagaacacacacacagggccaggccttctccctgtccgtcttccaccac
tggcagattgtccctggtgaccccctggacaagagcatcgtgatcaggccgctggagccc
cagcctgcccctcacctggccagagagttcatgatcaagacccgccggcgcaagggtctg
agtgaggatgtgagcatcagcaagttcttcgacgaccctatgttgttggagctggccaag
caggacgtggtgctcaactaccccatgtga
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