Salvelinus sp. IW2-2015 (Arctic char): 111981386
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Entry
111981386 CDS
T05762
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111981386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111981386
Spliceosome [BR:
salp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111981386
Complex C
U5 SnRNP specific factors
111981386
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Gene cluster
GFIT
Motif
Pfam:
EFTUD2
EFG_C
EFG_IV
GTP_EFTU
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
111981386
NCBI-ProteinID:
XP_023868386
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Position
LG20:7082656..7099084
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AA seq
939 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDDDLEADDRDADEADEDEDDEPADADEDVPGMEVVLHED
KKYYPTAEEVYGPEVETLVQEEDAQPLTEPIIKPVRNKQFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSFLFNIMVMLNTERLIKHAVQERLAITICINKVDRLIVELKLPPTD
AYYKLRHIVDEVNAMLSTYSTDENLVVSPLLGNVCFASSQYCVCFTLGSFAKIYSDTYGD
INYTEFAKRLWGDIYFNPKTRRFTKKAPTSNTQRSFVEFVLEPLYKILSQVVGDCDTSLP
RVLDELGIHLIKEELKLNIRPLLRLVCKRFFGEFTGFVDMCVQHIPSPQGGAKNKIEHSY
TGGLDSDLGEAMAECDPDGPLMCHTTKMYSTEDGVQFHAFGRVLSGTIQAGQPVKVLGEN
YTLEDEEDSQVCTVGRLWINVARYQIEVNRVPAGNWVLIEGCDQPIVKTATITEPRGNEE
AQIFRPLKFNTASVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTG
ELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLE
KGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSE
VDKALLGSVKDSIIQGFQWGTREGPLCDEPIRNVKFKILDAVIAQEPLHRGGGLVIPTAR
RVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKA
FIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREF
MIKTRRRKGLSEDVSISKFFDDPMLLELAKQDVVLNYPM
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctgtatgacgagtttgggaactacattgggccagaactagactctgac
gaggatgatgatctggaggcagacgacagagatgcggatgaggctgatgaggatgaggat
gatgagccggctgatgctgatgaagatgtcccaggaatggaggtagttctgcacgaggat
aagaaatactatcctacagcagaggaagtgtacgggccggaggtggaaactttagtccag
gaagaggacgcacagcccctcacagaacccatcatcaagcctgtaaggaacaagcagttc
actctgatggaacaggagctaccttccactgtttatgacatggagttcctggctgaccta
atggacagtcccgagctgatccgtaaygtcaccctgtgtggccacctgcaccacggaaag
acgtgtttcgtggactgcctgattgaacagacacacccagagatcaggaagagagatgac
atggatctccgttacacagatatcctcttcactgagcaggagcgaggggttggtatcaag
agcacccccgtcacaatggttcttccagactccagaggcaaatccttcctcttcaacatc
atggtgatgttgaacacagagcgtctgatcaagcacgcagtccaggagcgtctggccatc
accatctgcatcaacaaggtggaccgcctcatcgtggagctcaagctgccccctacagac
gcctactacaaactacgccacatagtggacgaggtcaacgccatgctcagcacctactct
acagacgagaacctggtggtgtctcctctcctggggaacgtgtgtttcgccagctctcag
tactgtgtttgcttcaccctgggctccttcgccaagatctactccgacacctacggtgac
atcaactacacagagtttgccaagaggctgtggggagacatttatttcaaccccaaaacg
cgcaggttcactaagaaagcccccaccagtaacacccagcgtagctttgtggagtttgtg
ttggagcctctgtacaagatcctatcccaggtggtgggtgactgtgacacgtctctgcct
cgggtgctggatgagttggggatccacctgatcaaagaggagctgaagctcaacatcaga
ccgctactcaggctggtctgtaagcgcttctttggagagttcactggctttgtggacatg
tgcgtgcagcatatcccctcaccacaggggggcgccaagaacaagatagagcacagctac
actggaggactggactcrgacctgggggaggccatggcagaatgcgaccctgatggtcct
ctgatgtgccacaccactaagatgtacagtactgaggacggggtgcagttccatgcgttc
ggccgggtgctgagcggtaccatccaggcgggccagccagtcaaggtgctgggagagaac
tacactctggaggacgaggaggactcgcaggtctgcacggtgggacgtctctggatcaac
gtcgccaggtaccagatagaggtgaaccgtgtgcctgccggyaactgggttctcattgag
ggctgtgaccagcccatcgtcaagaccgccaccatcaccgagccccgrgggaacgaggag
gcccagatcttccggccgctcaagttcaacacggcgtctgtcatcaagatcgctgtggag
ccagtcaacccgtcagagctgcccaagatgttggacggactgcggaaggtcaataagagc
tacccctccctcaccaccaaggtggaggagtcaggggaacatgtgatcctgggtactggg
gaactctacctggactgtgtcatgcacgacctgcggaagatgtactctgagatcgacatc
aaggtggctgaccccgtggtgaccttctgtgagacggtagtggagacgtcgtctctsaag
tgctttgccgagacgccgaacaagaagaataagatcaccatgattgccgagcctctggag
aagggcctggctgaggacatagagaacgaggtggtgcagatcacatggaacaggaagaag
ctgggagagtttttccagaccaagtatgactgggatctcctggctgccaggtctatctgg
gcctttggscccgacaccaccgggcctaacatcctggtagatgacaccctgccttctgag
gtggacaaggctctgctgggctcggttaaggacagcatcatccagggcttccagtggggc
accagggaggggcctctgtgtgacgaacctatcagaaacgtgaagtttaagatcctggat
gcggtcatagcgcaggagcctctacacagaggaggaggactggtcatccccacagccagg
agagtggtgtactctgccttcctcatggccacccccaggttgatggagccctattacttt
gtcgaggtccaggccccagctgactgtgtgtctgctgtgtacactgtactggccagacgg
agaggtcatgtgacccaggacgcccccatccccgggtctcccctctacaccatcaaggcc
ttcatcccagccatcgactcgtttggcttcgagactgacctgagaacacacacacaggga
caggccttctccctgtccgtcttccaccactggcagattgtccctggtgaccccctggac
aagagcatcgtgatcaggccactggagccccagcctgcccctcacctggccagagagttc
atgatcaagacccgccggcgcaagggtctgagtgaggatgtgagcatcagcaagttcttc
gacgaccctatgttgttggagctggccaagcaggacgtggtgctcaactaccccatgtga
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