Snodgrassella alvi: SALWKB2_1998
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Entry
SALWKB2_1998 CDS
T03063
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
salv
Snodgrassella alvi
Pathway
salv03030
DNA replication
salv03410
Base excision repair
salv03420
Nucleotide excision repair
salv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SALWKB2_1998
03410 Base excision repair
SALWKB2_1998
03420 Nucleotide excision repair
SALWKB2_1998
03430 Mismatch repair
SALWKB2_1998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salv03032
]
SALWKB2_1998
03400 DNA repair and recombination proteins [BR:
salv03400
]
SALWKB2_1998
Enzymes [BR:
salv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SALWKB2_1998
DNA replication proteins [BR:
salv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SALWKB2_1998
DNA repair and recombination proteins [BR:
salv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SALWKB2_1998
NER (nucleotide excision repair)
GGR (global genome repair) factors
SALWKB2_1998
MMR (mismatch excision repair)
DNA ligase
SALWKB2_1998
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SALWKB2_1998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_5
RUBY_RBDX
DUF4796_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AHN29380
LinkDB
All DBs
Position
complement(2201701..2204127)
Genome browser
AA seq
808 aa
AA seq
DB search
MDSVSEQQIIDLTALLNRYAHEYYDLDAPTVPDAEYDRLFRQLQALEEQYPQWRQPDSPS
IRVGGQAQQKFAAVVHQIPMLSLNNAFSPLNDNNQFDHSEMYAFDKRVRDGLGVEPEYIV
EPKFDGLAISLLYRDGLLVQASTRGDGYTGEDVTQNARTIVNIPLRLQGDQVPDVLEVRG
EVLMLKADFDRLNAHQQAENQKTFANPRNAAAGSLRQLDPKITARRRLHFYAYGIARLDE
RFAVNSHSEELALLARLGLTVPPQDNLCYQADIGKVLAFYEHIFQIRADLPFGIDGVVIK
VDNLALQEQLGYVARAPRFAIAQKFPAEEMLTTVEAIDVQVGRTGAVTPVARLTPVFVGG
VTVTNATLHNESEAQRKDVREGDTVIVRRAGDVIPEIVSVVLAQRPMVEKPAADLLTPPE
AVPKYPPFRMPENCPVCGHEIVREEGEAVARCSGGMLCHAQRVQSLIHFASRRAMDIENL
GDRQIEQLVTQGKVRHFADVYHLQLADLLAMKQQAKQEAGESSAESVTNELELSATDKAG
KQQPSRWAENILAGIQASRQRPLANLIYALGIFHVGERTAKQLAQAFGDLATLTQATEPL
LACLPDIGKVVAHSVAYFFSQEDQTSQLQELLDAGVQPQTETRRTPLGKYFTPERILARL
PCASLTEARAQKLWQLAGKDWSQLLTDKALPESWQKWCSQPENHELLQKTIELREQLLSG
ETEEKTSSVNEAVAGKTFVLTGTLPDWSRDVAQQHIEEAGGKVSGSVSKKTDFVVAGAEA
GSKLSKAEALGVTILDQAALMTMLGIKE
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtaagcgaacagcaaattattgatttaaccgctctgctcaatcgttatgcg
catgagtattatgatctggatgcacctactgtgccggatgcggaatatgaccggttgttt
cgccagttgcaggctctggaagagcaatatccgcaatggcggcagccggacagcccgagt
atacgtgtaggcgggcaggcacagcaaaaatttgctgctgtggtgcaccagattccgatg
ctgtcactgaacaatgcattttcaccactgaatgataataatcagttcgaccatagtgag
atgtatgcttttgataaacgggtacgtgatggtcttggtgttgagcctgaatatattgtt
gaaccaaagtttgatggtctggcaatcagtttgttgtatcgtgacggtctgctggtacag
gcatctacgcgcggagatggatataccggcgaggatgttactcagaatgcgcgcactatt
gttaatattccattgcgtctgcagggtgatcaggtaccggatgtgctggaggtacgcggt
gaagtgctgatgcttaaagccgattttgaccggcttaatgcacatcagcaggcggaaaat
cagaaaacttttgccaatccgcgtaatgcagcggctggcagtttacgccagctggatccg
aaaataacggcacgccggcgcttgcatttctatgcctacggaattgccagactggatgag
cgttttgcggtaaatagccacagcgaagagctggcattgctggctcgtttggggctgact
gtaccgccacaggataatttgtgctatcaggctgatattgggaaagtgctggctttttat
gagcatatttttcagatacgtgcagatttgccgtttggcatcgatggtgtagtgattaag
gtggataatctggctctgcaggagcagcttggctatgtagcccgtgctccgcgttttgct
attgcccaaaaatttccggcagaggaaatgctgactacggtagaggctattgatgtacag
gtgggacgtaccggtgcagtaacaccagtagcacggctgacgccggtatttgtaggtggt
gttacagttaccaatgcaactttgcataatgaaagtgaagcacagcgcaaggatgtacgt
gagggtgacacggttattgtgcgccgtgccggagatgttattcctgaaattgtatctgtg
gtgctggcacagcgtccaatggtggaaaaaccggcggcagatttgcttactccgcctgaa
gctgtaccgaaatatccgccgttccgtatgccagaaaattgtccggtttgcggtcatgaa
attgtccgtgaagagggcgaagcagtggctcgttgcagtggcggaatgctgtgtcatgct
cagcgggtgcagtcgctaattcactttgcttcacgtcgcgccatggatattgaaaatctc
ggtgaccggcagattgaacagttagtaacacagggcaaagtccgtcattttgctgatgtt
tatcatttgcaattggccgatttgctggcaatgaaacagcaggctaaacaggaagcagga
gaaagctcagcagagtcggtgacaaatgaactggaattatctgcaactgataaagcaggc
aaacagcagccatccagatgggctgaaaatattctggccggtattcaggccagccggcag
cgtcctctggctaatttaatttatgctttgggtatttttcatgttggtgagcgtacagca
aaacagctggcacaggctttcggtgatctggctacgcttactcaggctactgagccgtta
ctggcctgtttgccggatatcggtaaggtggtagcacattcggtagcctattttttcagt
caggaagatcagaccagtcaattgcaggaattacttgatgccggtgtgcaaccgcagaca
gaaacacgtcgcacaccgctgggtaaatactttactcctgagcggatactggctcgttta
ccctgcgctagtttaacggaagcgcgggcacagaagctgtggcaactggcgggtaaggac
tggtcacaactgttaactgataaagccttgccggaaagctggcagaaatggtgcagccag
cctgaaaatcatgaattactgcaaaagacaattgagttacgtgaacagctgcttagcgga
gagacggaggaaaagacgtcatcggttaatgaagctgtagccggtaaaacttttgtgtta
accggtactttaccagactggtcacgtgatgtggcacagcagcatattgaagaagccggt
ggtaaagtgagcggcagtgtatcgaaaaaaactgattttgtggtggccggagcagaggcg
ggcagcaagctatccaaagctgaggcacttggtgttactatactggatcaggctgcacta
atgactatgctgggaattaaagagtaa
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