Spiroplasma alleghenense: SALLE_v1c01170
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Entry
SALLE_v1c01170 CDS
T06597
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
salx
Spiroplasma alleghenense
Pathway
salx03030
DNA replication
salx03410
Base excision repair
salx03420
Nucleotide excision repair
salx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
salx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SALLE_v1c01170 (ligA)
03410 Base excision repair
SALLE_v1c01170 (ligA)
03420 Nucleotide excision repair
SALLE_v1c01170 (ligA)
03430 Mismatch repair
SALLE_v1c01170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salx03032
]
SALLE_v1c01170 (ligA)
03400 DNA repair and recombination proteins [BR:
salx03400
]
SALLE_v1c01170 (ligA)
Enzymes [BR:
salx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SALLE_v1c01170 (ligA)
DNA replication proteins [BR:
salx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SALLE_v1c01170 (ligA)
DNA repair and recombination proteins [BR:
salx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SALLE_v1c01170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SALLE_v1c01170 (ligA)
MMR (mismatch excision repair)
DNA ligase
SALLE_v1c01170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SALLE_v1c01170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
Nlig-Ia
HNOB
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AXK50793
UniProt:
A0A345Z2G4
LinkDB
All DBs
Position
133398..135404
Genome browser
AA seq
668 aa
AA seq
DB search
MKINEAKLKITELTEKLNQWNLEYYEDDNPSVDDVEYDLALKELKSLETQFPELISSESP
TQKVGGFIASKFEKYEHSQPMLSLGNAFNKEDLIEFDQQILKVTNSDKHNYFAELKIDGL
SISLIYKNKKLFKAVTRGDGLVGEDVTANVKMIKEIPHEIETDEEIVEVRGEIYLSKDEF
AKINQKRLAANEPIFANPRNAAAGTLRQLDSRVVKERNLKAFLYFYMNRESDSIKTHEES
LELIKRLGLPTNNEGKLCQSIEEVWNYIEKYTQIRNDLPYEIDGIVIKINNFELYEKIGY
TSKTPKWAIAFKFPAEIKSTKLIDIFPTIGRTGRVTYNAQLEPVQIAGTTVRAATLHNAD
FIISRDIRIGSMVKIKKAGDIIPEVISSINDNEFEKLAIWKPATNCPDCESFLEKTPGEV
DQYCINNNCPKKIIKSLEHFVSRDAMNIEGLSIKILEKLYGEKIINDVADIFKIEKFEKQ
IVELENFGEKSFKNLITAIQKSKNNSSERLLFGLGIRHVGKKTAKVLIKNYKSIVNLMKI
DFQELSQIYDIGVVVAQSLVDWFLVEENKKLIEKIKNLGVNLDYKNEAESVSELFLNQIF
VITGTLSKSRNHFRDLLENNGAKVTESISKNANYLLAGEDGGSKLAKAKNLGVKIISEKD
LINMMEEK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaatgaagctaaattaaaaataacagagcttactgaaaagttaaaccaatga
aacttagaatattatgaagatgataatccaagtgttgatgatgttgaatatgatcttgca
ttgaaggaactaaaatcacttgaaacacagtttcctgaactaatttcgagtgaatctcca
actcaaaaagttggtggatttattgcaagtaaatttgaaaaatatgagcacagccaacca
atgttaagtttgggtaatgcctttaataaggaagatttaattgaatttgatcaacaaatt
ttaaaagtaacaaattcagataaacataattattttgctgaattgaaaatagatggacta
tcaatatcactaatatataaaaataaaaaacttttcaaagctgttactcgtggtgatggt
ttagttggagaagatgttactgccaatgttaaaatgattaaagaaataccccatgagatt
gaaactgatgaagaaattgttgaagttcgcggggaaatatatttatccaaggatgagttt
gctaaaataaaccaaaaaagattggctgcaaatgaaccgatatttgccaaccctagaaat
gctgcggcaggaactttacgccaacttgattctagagtcgttaaggaaagaaatttaaaa
gcttttttatatttttatatgaaccgtgaatcggattctattaaaacacatgaagaatct
ttagaattaattaagcgcttgggactaccaacaaacaatgagggtaagctttgccaaagc
attgaagaagtttgaaattacatcgaaaaatatactcaaataagaaatgaccttccatat
gaaatagatggaatagtaattaaaattaataattttgaactttatgaaaaaattggttac
acaagtaaaactccaaagtgagcaattgcatttaagtttccagcagagataaagtcaact
aaattaattgatatctttccaacaattggaagaacgggtagagtaacttacaatgctcaa
ctagaaccagtgcagattgccggtacaacagtaagggctgcaaccctacataacgcagac
tttattatttcaagagacattagaataggttcgatggtgaaaataaaaaaagcaggagac
attattcctgaggttatttcaagcattaatgataatgaatttgaaaaattggctatttga
aaaccggccacaaactgtccagattgtgaaagttttctagaaaaaacacccggtgaagtt
gatcagtactgtataaataataactgtccaaaaaaaattattaagagtttggaacatttt
gtcagtcgcgatgctatgaacatcgaaggtttaagtatcaaaatattagaaaaactttat
ggagagaaaataattaacgatgttgctgatatttttaagattgaaaaatttgaaaaacaa
atagttgagctagaaaattttggagaaaagagttttaaaaatttgatcacagcaattcag
aaaagtaaaaataattctagtgaaagattattatttggtttagggattcgtcacgttggt
aaaaaaactgctaaggtgctaatcaagaattataaatcaattgtaaatttaatgaaaatt
gattttcaagagttgtcacaaatttatgatattggagtcgtagttgctcaatctttagtt
gattgatttctagttgaagaaaataaaaagttaattgagaaaataaaaaaccttggagta
aatttggattataaaaatgaagcagaatcagttagtgaattatttttaaatcaaatattt
gttattacagggacattatcaaaatctagaaatcattttagagatttattagaaaataat
ggtgctaaagttacagaaagcattagcaaaaatgccaactatttactcgctggagaagat
ggtggaagtaagcttgcaaaggccaaaaacttaggagttaaaataatttcagaaaaagac
ttaataaatatgatggaggaaaaataa
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