Salmonella sp. SSDFZ69: EOS98_06830
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Entry
EOS98_06830 CDS
T06160
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
salz
Salmonella sp. SSDFZ69
Pathway
salz03030
DNA replication
salz03410
Base excision repair
salz03420
Nucleotide excision repair
salz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
salz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EOS98_06830 (ligA)
03410 Base excision repair
EOS98_06830 (ligA)
03420 Nucleotide excision repair
EOS98_06830 (ligA)
03430 Mismatch repair
EOS98_06830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salz03032
]
EOS98_06830 (ligA)
03400 DNA repair and recombination proteins [BR:
salz03400
]
EOS98_06830 (ligA)
Enzymes [BR:
salz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EOS98_06830 (ligA)
DNA replication proteins [BR:
salz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EOS98_06830 (ligA)
DNA repair and recombination proteins [BR:
salz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EOS98_06830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EOS98_06830 (ligA)
MMR (mismatch excision repair)
DNA ligase
EOS98_06830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EOS98_06830 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AZY97334
LinkDB
All DBs
Position
1394661..1396676
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQ
RVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPQEVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQA
ATIDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgaatat
ctgtatcatgtgatggatgcgcccgagattcccgacgccgaatatgaccgcctgatgcgg
gaactgcgagagctggaggcgcaacgtccggaccttatcacgccggattcgcccacgcag
cgcgttggcgcggcgccgctgacggcattcaaccagattcgccatgaagtaccgatgctg
tcgctcgataacgtatttgatgaagaaagcttcctggcgtttaacaagcgagtgcaggat
cgtctaaaaagcacggaaaatgtcatctggtgctgcgagctaaagctggatggcctggcg
gtcagcattctgtatgaaaacggcgtgctggtgagcgctgcgacgcgtggcgacggcacc
accggtgaagatatcacttcaaacgtgcgcacgattcgcgccattccgttaaagctgcac
ggcgataacattccggcgcgtcttgaagttcgcggagaggtatttttaccgcaggccggg
tttgaaaagatcaatgaagacgcgcgccgcactggcggcaaagtgtttgctaacccgcgt
aacgcggcggcgggctcgctgcgtcagctcgatccgcgtattacggcgaagcgaccgcta
acatttttctgctacggcgtcggtattctggaaggcggcgagttgccggatacgcatctg
gggcgtttgctgcaatttaaagcgtgggggttaccggtcagcgatcgcgtgacgctgtgc
gattctccccaggaggtactggatttttatcacaacgtcgaaaaagatcgccccacgctc
ggttttgatatcgacggcgtggtgattaaggtcaactcgctggctttgcaggaacagctg
ggctttgtggcccgcgcgccgcgctgggcggtggcgtttaaatttcctgctcaggagcag
atgacttttgtgcgcgacgttgagtttcaggtagggcgtaccggggcgattacgccggtg
gcgcgtctggaaccggttcaggtggctggtgtgctggtcagcaatgccacgttgcataat
gccgatgaaattgagcggcttggcttgcgcattggcgataaggtggttatccgtcgggca
ggcgatgtgatccctcaggtggtcaacgtggttctgtctgaacgccctgaagagacgcgt
ccgattgtgtttccaacgcactgtccggtgtgcggatcggacgtagagcgcgtcgaaggc
gaagccgttacccgttgtaccggcgggctgatttgcggcgcgcagcgtaaagagtcgctg
aaacattttgtgtcgcgccgggcgatggatgtagacgggatgggcgataagatcatcgac
caactggtggaaagggagtatgtccatacgccagcggatctgttccgtctgacggcgggt
aaactgaccggcctggaccgaatggggccaaagtccgcgcaaaatgttgtaaacgcgctg
gaaaaagccaaagcgacgacctttgcgcgttttctctatgcgctgggcatccgtgaagtg
ggtgaagcgacggcggcggggctggcggcttatttcggtacgctggaggcgctgcaggcc
gccacgattgacgagttgcagaaagtacctgacgtgggaattgtggtcgctacgcacgtc
tttaacttttttgccgaagagagtaatcgtgatgtgattgggcagctactggcggaaggg
gttcactggcccgcgccggtagtcattaatgtgcaagagatcgatagcccgtttgccggt
aaaaccgtggtactaaccggtagcctgagccagatgtcccgcgatgacgctaaagcgcgt
ttagtggcgcttggcgcgaaagtggcaggcagcgtatcgaagaaaaccgatctggtgatt
gccggtgaagccgcgggttccaaacttgccaaagcgcaggaactgggtattaccgtgatt
gatgaagcggaaatgatccgcttgctgggtgcctga
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integrated database retrieval system
