Sphingobium amiense: SAMIE_1002130
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Entry
SAMIE_1002130 CDS
T06684
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sami
Sphingobium amiense
Pathway
sami03030
DNA replication
sami03410
Base excision repair
sami03420
Nucleotide excision repair
sami03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMIE_1002130
03410 Base excision repair
SAMIE_1002130
03420 Nucleotide excision repair
SAMIE_1002130
03440 Homologous recombination
SAMIE_1002130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sami03032
]
SAMIE_1002130
03400 DNA repair and recombination proteins [BR:
sami03400
]
SAMIE_1002130
Enzymes [BR:
sami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMIE_1002130
DNA replication proteins [BR:
sami03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMIE_1002130
DNA repair and recombination proteins [BR:
sami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SAMIE_1002130
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMIE_1002130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DprA_N
HHH_5
HHH_2
HAMP_N3
HHH
IMS_HHH
Ribosomal_60s
Motif
Other DBs
NCBI-ProteinID:
BBD96712
UniProt:
A0A494W8J3
LinkDB
All DBs
Position
complement(255319..258105)
Genome browser
AA seq
928 aa
AA seq
DB search
MTQNHLYLVDGSGYIFRAYHQLPPLTNRHGQPVGAVYGYTTMLWKLAEELGRAEGPTHMA
VVLDKGSHTFRNDMYDQYKAHRPPPPEDLVPQFPMIRDATRAFSLPCIEEAGYEADDIIA
SYTQAAVAQGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVVGKFGVGPELLGDV
LALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALEAAPLMKKSKMQENLIAHADMARL
SRRLVALHDRMDLPEPLEELTLKGIPKEPLQAFLEHHGFKTLLGRLGAPAAAVAVAAAAA
AATDEAAPPPPAFADEPAIDRSLYETVVTEDALDRWIAAAQAEGVVAVDTETDMLDCVSC
GLVGISLATGPNAACYIPVGHGGTDMFAERPAQLDKALVLAKLKPLLEDDAVLKVGQNLK
YDLTVLRRHGIEVAPYDDTIVMSFDLDAGQSLAGHGMDEAARVHLNHQCISFKDVVGSGK
NQITFGEVPLDRATEYAAEDADVTLRLWKRFKTRVANEGASRVYELVDRPLVGVIAGMEF
EGIKVDREALSRLSAEFTAGIAALETEIHEIAGQPFAIGSTQQLGAILFDKMGYKGGKKG
KSGAYSTDVTILEQLKAQGALIAAKVLEWRQLSKLKSTYTDALQAQINRDTGRVHTSYSL
TGAQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVP
ALREAFANGEDIHAATAQQLFGEVNRDTRGRAKTINFAILYGISRWGLAGRLEIGADEAQ
DMISRYYERFPGISVYINDTIEKARRLGYTETLFGRKTWFPRIAAPIQHERQGAERAAIN
APIQGTSADIIKRAMARMGPALEAAGLPNVRMLLQVHDELVFELPAGDVDAASAVIRHVM
ETAAEPLVKLSVPLGVEIGTGLSWGAAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgacccagaatcacctctacctcgtcgacggctcgggctatatcttccgcgcctatcac
cagttgcctccgctcaccaaccggcacggccagccggtcggcgcagtctatggctatacg
acgatgctgtggaagctggcggaggaactgggccgcgccgaagggccgacgcacatggcc
gtggtgctggacaaggggtcgcacaccttccgcaacgacatgtatgaccagtataaggcg
caccgcccgccgccgcccgaggatctggtcccccagttcccgatgatccgcgacgcgacc
cgcgccttctccctcccctgcatcgaggaagcgggctatgaggcggacgacatcattgcg
agctacacccaggcggcggtggcgcagggctggcacgtcaccatcgtcagcagcgacaag
gatctgatgcagctcatccagcccggcgtcgacatgtatgacacgatgaagaatgagcgg
cgcggcgcggattatgtcgtcggcaaattcggcgtcgggccggaactgctgggcgacgtt
ctggcgctgatgggcgacagcgtggacaatgtgcccggcatccccggcatcggccccaag
acggcggcgaagctcatcaccgaatatggcggcctcgaagcggcgctggaagccgcgccg
ctgatgaagaaatcgaagatgcaggaaaacctcatcgcccatgccgacatggcccgcctg
tcgcgccggctggtggcgctgcacgacaggatggacctgcccgagccgctggaggaactg
acgctcaagggcattcccaaggagccgttgcaggcgtttctggagcatcatggcttcaag
accctgctgggccgcctcggtgccccggcggcggcggtcgcggtggcggcggcagcggcg
gcggcgaccgacgaagccgccccgcccccgcccgccttcgccgacgaacccgccatagac
cgcagcctctacgaaaccgtggtgacggaggacgcgctcgaccgctggatcgcggcggcg
caggcggagggcgtggtagcggtcgataccgagaccgacatgctcgactgcgtctcctgc
ggcctcgtcggcatcagccttgcgaccgggccgaacgcggcctgctacatacccgtgggc
catggcggcaccgacatgttcgccgagcggcccgcgcaactggacaaggcgctggtgctg
gcaaagctcaagccgctgctggaggatgatgccgtcctcaaggtcggccagaacctcaaa
tatgacctcaccgtcctgcgccgccacggtatcgaagtcgcgccctatgacgacaccatt
gtcatgagcttcgaccttgacgccggacagagcctcgccgggcacggcatggacgaagcc
gcgcgggttcacctcaatcaccagtgcatcagcttcaaggacgtggtcggctccggcaag
aaccagatcaccttcggcgaagtccccctcgaccgcgcgaccgaatatgccgccgaggac
gcggacgtaacgctgcgcctgtggaaacgcttcaagacccgcgtcgccaatgaaggcgcg
agccgcgtctacgaactggtcgaccgcccgctcgtcggcgtgatcgcgggcatggaattt
gaagggatcaaggtcgaccgagaggcgctgtcacgcctctccgccgagttcaccgcgggc
atcgccgcactggaaacggaaatccacgaaatcgcaggccagcccttcgccatcggatcg
acccagcaactcggcgcgatcctgttcgacaagatgggctacaagggcggcaagaagggc
aagtccggcgcttattccaccgatgtcaccatcctcgaacagttgaaggcgcagggcgcg
ctcatcgccgcgaaagtgctggagtggcggcagctatcgaagctcaaatccacctatacc
gacgcgcttcaggcgcagatcaaccgggataccggccgcgtccacaccagctattcgctg
accggcgcgcagaccggccgcctctcctcgaccgatcccaatctccagaacattcccatc
cggaccgaggtcgggcggcagatccgccacgccttcgtcgccgaaccgggcaacgtcatc
ctcgccgctgactacagccagatcgaactgcgcctcgccgcccatatggcggacgtgccc
gcgctgcgcgaagccttcgccaacggggaggatattcacgccgccaccgcgcagcaactg
ttcggggaggtcaaccgcgacacgcgcgggcgcgcgaagacgatcaacttcgcgatcctc
tacggcatctcccgctggggtctggccggacggctggagatcggcgcggacgaagcgcag
gacatgataagccgctattatgagcgcttccccggcatcagcgtctatatcaacgacacg
atcgagaaggcgcgcaggctgggctacaccgaaaccctgttcgggcggaagacatggttt
ccccgcatcgccgcccccatccagcatgaacggcagggggcggagcgcgcggcgatcaac
gcgcccattcagggcaccagcgccgacatcatcaagcgggcgatggcgcgcatgggaccg
gcgctggaagcggcgggactgcccaacgtcaggatgctgcttcaggtccatgacgaactg
gtgttcgaactgcccgcaggcgatgtggacgccgccagcgccgtcatccgacacgtcatg
gaaaccgccgccgaaccgctcgtcaaactctcggtgccgctgggcgtcgaaatcggcacg
ggattgagctggggtgcggcgcactga
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