Sphingobium amiense: SAMIE_1005560
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Entry
SAMIE_1005560 CDS
T06684
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sami
Sphingobium amiense
Pathway
sami03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMIE_1005560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sami03019
]
SAMIE_1005560
03016 Transfer RNA biogenesis [BR:
sami03016
]
SAMIE_1005560
Enzymes [BR:
sami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SAMIE_1005560
Messenger RNA biogenesis [BR:
sami03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAMIE_1005560
Transfer RNA biogenesis [BR:
sami03016
]
Prokaryotic type
tRNA degradation factors
SAMIE_1005560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
BBD97055
UniProt:
A0A494W9E9
LinkDB
All DBs
Position
661286..663607
Genome browser
AA seq
773 aa
AA seq
DB search
MFDVKKVSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSF
DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA
ATHDAVMMVESEAKELSEDVMLGAVLFAHEASKKIANAIIDLAEQAAKDPWDIAKGDDLG
DLKKKLTKLIGKDIAAAYKLTDKSARSNALNEARAKAKAQFAADGLDAQTVMAGIKLTKK
LEAEIVRTAILKEGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTK
DAEQMIDGLTGLHYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD
EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDFAVIS
DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK
ALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS
SDTAQIEAAKKWILGIVEEAEVGKVYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMRNERV
EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPAREPREPRGDRGDR
GDRGRGPRRDGGDRGGRGGDRGPRRDRGPRSEGGKGGDDDGSSAGLPDFLTQD
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgtaaagaaagtttcgatcgagctggcaggaaagaccctgactctcgaaacc
ggtcgcattgcgcgtcaggccgacgccgccgtgctggcgacctatggcgagacggtggtg
ctgtgcgccgtgaccgccgccaagtcggtgaaggaagggcaggatttcttcccgctgacc
gtccactatcaggaaaaatattccgctgccggccgtatccccggcggcttcttcaagcgt
gaacgcggcgcgacggaaaaggaaacgctggtttcccgcctgatcgaccgcccgatccgc
ccgctcttccccgaaggtttctataacgaaatcaacgttattgctcaggttctgagcttc
gatggtgaaagcgagcctgacattgtggcgatgatcgctgcatcggccgcgctgaccctg
tcgggcgtgcccttccttggtcccatcggcgcagcgcgcgtcggctacaaggacggcgaa
tatcagctcaacccctcgctcgacgaagtgaagaccggcgaactcgacctcgtcgtcgcc
gccacgcacgacgccgtgatgatggtcgaatccgaagccaaggagctttcggaagacgtc
atgctcggcgccgtcctcttcgcgcatgaagcgagcaaaaagatcgccaatgcgatcatc
gacctcgccgagcaggccgcgaaagatccgtgggacatcgccaagggcgacgatctcggc
gatctcaagaagaagctgaccaagctgatcggcaaggacattgcggccgcctacaagctg
accgacaagtccgcccgttcgaacgcgctcaacgaagcccgcgccaaggcgaaggcccag
ttcgcggctgacggcctcgacgcgcagaccgtgatggcgggcatcaagctcaccaagaag
ctggaagccgaaatcgtccgcaccgccatcctcaaggaaggcaagcgcatcgacggccgc
accaccacccagatccgcccgatcgaggcgatggtcggcttcctgccgcgcacccacggt
tcggcgctgttcacccgcggtgaaacgcaggcgatctgcaccaccacgctcggcaccaag
gatgcggagcagatgatcgacggcctcaccggcctgcactatgaaaacttcatgctgcac
tacaacttcccgccctactcggtcggtgaagtgggccgcttcggcgcgccgggccgtcgc
gaagtcggccatggcaagctggcgtggcgtgcgctgcaccccgtgctgccgagcaaggac
gagttcccctatacgatccgcgtcctgtccgacatcaccgagtccaacggctcctcctcg
atggcgaccgtctgcggcggttcgctctcgatgatggacgcgggcgtcccgctgaagcgt
cctgtgtccggcatcgccatgggcctgatcctggaaggcaaggatttcgccgtcatcagc
gatattctgggtgacgaggatcacctcggcgacatggacttcaaggtggcgggcacggaa
gcgggcatcaccaccatgcagatggacatcaaggtcgccggcatcacgcaggaaatcttc
gaggtcgcgctgcgtcaggcgaaggaaggccgcgcgcacattctgggtgagatgagcaaa
gccctgtcctcgacccgcaccgaactgtcggcgcacgccccgcgcatcgagacgatccag
atcgacaagtccaagatccgcgacgtcatcggcacgggcggcaaggtcattcgcgagatc
gtggcggaaaccggcgcgaaggtcgacatcgacgacgaagggatcatcaagatcagctct
tccgacaccgcccagatcgaagccgccaagaagtggattctcggcatcgtcgaggaagcg
gaagtcggcaaggtctacaccggcaaggtggtcaacatcgtcgacttcggcgcattcgtg
aacttcatgggcggcaaggacggtctcgtccacgtctccgaaatgcgtaacgagcgcgtc
gaaaagccgaccgacgtcgtgtcagaaggccaggaagtgaaggtcaaggttctcgaaatc
gacccgcgcggcaaggttcgcctgtccatgcgcgtcgtcgatcaggaaaccggcgaggaa
ctggaagacacccgtcccgcccgcgaaccgcgcgaaccgcgcggcgaccggggtgatcgt
ggcgatcggggccgtggcccgcgccgtgacggcggcgaccgtggtggtcgtggcggtgac
cgcggtccccgccgggatcgcggcccgcgtagcgaaggcgggaagggcggcgatgacgat
ggttccagcgccggtctgcctgacttcctgacccaagactga
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