Sphingobium amiense: SAMIE_1007540
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Entry
SAMIE_1007540 CDS
T06684
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sami
Sphingobium amiense
Pathway
sami03030
DNA replication
sami03430
Mismatch repair
sami03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMIE_1007540
03430 Mismatch repair
SAMIE_1007540
03440 Homologous recombination
SAMIE_1007540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sami03032
]
SAMIE_1007540
03400 DNA repair and recombination proteins [BR:
sami03400
]
SAMIE_1007540
Enzymes [BR:
sami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMIE_1007540
DNA replication proteins [BR:
sami03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMIE_1007540
DNA repair and recombination proteins [BR:
sami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMIE_1007540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
tRNA_anti-codon
HHH_3
COE1_HLH
Scaffold
Motif
Other DBs
NCBI-ProteinID:
BBD97253
UniProt:
A0A494VXZ4
LinkDB
All DBs
Position
893627..897172
Genome browser
AA seq
1181 aa
AA seq
DB search
MPHAAFVPLRVFSSFTMLEGAIDPKKIAKQARALGFPAAAITDRNGLYGSMAFSDACRDE
GVQPVIGAMLGVLRPGRPANAAPVHDWLALYAQDAAGYDNLCALVSMAHLDRPVEEVPHV
SIETLAGRTDGLIALTAGGEGALARLFAEDQPEAALAYAQRLEALFPDRLYIEICRRFDP
VEGKAEAALLDLAYARDLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETPDRRTSSPD
AWMKPAGEMKRLFDDLPEALANTLVVAQRCAVAAPKRKPILPSLAGDIEGEARMLREQAA
AGLEARLEKAGIVGAEARQPYYDRLTFETDIIIQMGFPGYFLIVADFIKWAKDNGIPVGP
GRGSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQ
KYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERSLNGV
SEFRAEYDNDNQVRRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYRDPRSDMPV
TQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVHVDLDTLAWDDPAVYELLQRG
DTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNGQEEIEYPH
ILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVKAEMDAQRSRFVEG
CVEKSAIPAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEFYAGSMAF
DIHLTDKLTVFVDDMRRMGLTCLPPDINRSLADFSVEAVPHEGEDPRLGFAVRYALGGLK
GVGEKAMEQLVEERDKGGPFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGVHADRGGVH
AAAETILSVASSNAQARESGQGGLFGDVETPHADVRIPPHQAWTVADRMAQEKEAFGFYF
SAHPVDRYRHLADARGAKSYGLICQSPMPAPNAEGRSMTIMAAMVEDVRWRETKRGARYA
SATFSDQSGQFQASCFDEPACKAIEELAGDGDCALLIVELDRLPGEETPRVTVRGVEPFR
TIASASRMELVVDCETVAAVEALAALLAKAGGGRSEVFLRAPLGDAQAARLFLGDSYSLG
ADQVDAIATIAGLAIHRFERMDVKADGYRTRTRRTPLRLVS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgcctcacgccgccttcgtcccgcttcgcgtcttttcctccttcaccatgctggaaggc
gcgatcgaccccaagaagatcgcgaaacaggcaagggcactgggctttcccgccgccgcc
attaccgaccgcaacggcctctacgggtccatggccttttccgatgcgtgcagggatgag
ggggtgcagccggtcatcggggcgatgctgggcgtgctgcgccccggccgccccgcaaac
gccgctccggtgcacgactggctggcgctttatgcgcaggatgcggcgggatatgacaat
ctgtgcgcgctggtttcgatggcgcatctggaccggccggtcgaagaagtgccccatgtc
agcatcgaaacgctggcagggcgcacggacggcctgatcgcgctgacggcggggggtgag
ggcgcgctggcgcgactgttcgcggaggatcagcccgaggcggcgctggcctatgcgcag
cggctggaggcgctgttccccgaccggctctatatcgaaatctgccgccgcttcgatcct
gtcgagggcaaggcggaggctgcgctgctcgacctcgcctatgcgcgcgacctgccgctg
gtggcgaccaacccgacctgctttgccgagccgcatttccacgaggcgcatgacgtgatg
ctgtgcatcgccgacagcgcctatgtcgagacgcccgaccgccgcaccagttcgcccgat
gcatggatgaagcccgcgggcgagatgaaacggctgttcgacgatctgcccgaagcgctt
gccaacacgctggtggtggcgcagcgctgcgcggtcgccgcgcccaagcgcaaacccatt
ctcccgagccttgcgggcgacatcgagggcgaggcgaggatgctgcgtgagcaggcggcg
gctggccttgaagcacggctggagaaagcgggtatcgtcggggcggaggcgcgccagccc
tattatgaccggctgaccttcgaaaccgacatcatcatccagatgggtttccccggctac
ttcctgatcgttgccgacttcatcaaatgggcgaaggacaatggcattccggtggggccg
gggcgtggatcgggcgcggggtcgctggtcgcgtgggcgctgaccatcaccgatctcgac
ccgctgcaactcgggctgctgttcgaacgattcctcaatcccgagcgcgtgtcgatgccc
gacttcgacatcgacttctgcgaaacgcggcgcggcgaggtgatccgctacgtccagcag
aaatatggggccgaccatgtggcccagatcatcaccttcggtaagctcaaggcgcgcgcc
gtgctcaaggatacggggcgcgtgctccagatgagctatgggcaggtggaccggctggcg
aagctggtgcccaatcacccgaccgatccgtggacgctggagcggtcgctgaacggcgtc
agcgagttccgcgcggaatatgacaatgacaatcaggtccgccgcctgatcgactatgcg
atgaagctggagggctttccgcgccactcgtccacgcacgcggcgggcgtggtcatcggt
gatcggcccctgtcgcagcttgtgccgctctaccgcgatccgcgatccgacatgccggtg
acgcagttcgacatgaaatatgtcgagggcgcgggcctcgtgaagttcgactttctgggc
ctcaagacgctatcagtgttgcagaaggcggtgcagttgctcgccgggcgcggcgtgcat
gtcgatctcgatacgctggcatgggacgatccggcggtctacgagctgctccagcgcggc
gatacggtgggcgtgttccagctcgaatccgaagggatgcgcaagacgctggccgccgtg
cggccgaccaatttcggcgacatcatcgcgcttgtgtcgctctaccgccccggtccgatg
gacaatattccgatgttcgggcgtcgcaagaacgggcaggaagagattgaatatcctcat
attctcctgaaaccgatcctcgaagagacctatggcatcttcgtctatcaggaacaggtg
atgcaggccgcgcagatccttgcgggctacagcctcggagacgcggacctgctgcgccgc
gcgatgggcaagaaggtcaaggcggagatggacgcgcagcggtcccgcttcgtggagggc
tgcgtggagaagagcgccataccggcggcgaaggcgaacgagctgttcgacttgatcgac
aagttcgcgggctatggcttcaacaagagccacgcggcggcatacgccctgctcgcctat
cagacggcatggctgaaggcgcattatccggccgagttctacgccgggtcgatggcgttc
gacatccatctgaccgacaagctgacggtgttcgtggacgatatgcggcgcatgggactc
acctgcctgccgcccgacatcaatcgcagccttgcggatttctcggtcgaggcggtgccg
catgagggcgaagacccccggctgggctttgcggtgcgctatgcgctcggcggtctcaag
ggcgtgggcgaaaaggcgatggagcagcttgtcgaggagcgcgacaagggtgggccgttc
aagagcctcgacgatttcgccgaccggatcgagccgcggctgctcaaccggcggcagctc
gaaagccttgcggcggcgggcgcattcgatggcgtgcatgcggaccggggcggcgttcat
gcagcggcggagacgatcctgtcggtcgcttcgagcaatgcgcaggcgcgggagagcggg
cagggcggcctgttcggcgatgtcgagacgccgcacgccgatgtgcgcattccgccgcat
caggcctggaccgtggcggaccgcatggcgcaggagaaggaggcgttcggcttctatttc
tcggcgcatccggtcgaccgctaccggcatctggccgacgcgcgcggggcgaaaagctat
ggcctgatctgtcagtcgcccatgcccgcgcccaatgcggaaggccggtcgatgacgatc
atggcggcgatggtcgaggatgtgcgctggcgcgaaacgaaacgcggcgcgcgctacgcc
agcgcgacattttccgaccagagcgggcagtttcaggcgagctgcttcgacgaaccggcg
tgcaaggccatcgaggaactggcgggcgacggggattgcgcgctgctgatcgtggagctg
gaccggcttcccggcgaggaaacgccgcgcgtgaccgtgcgcggggttgaaccgttccgc
accatcgccagcgcgtcgcgcatggagctggtggtggactgcgagacggtggcggcggtg
gaggcgctggcggcgctgctggcgaaggctggcggcgggcggagcgaggtgttcctgcgc
gcaccgctgggcgatgcgcaggcggcgcggctgttcctgggggacagctacagcctgggc
gcggatcaggtcgacgcgattgcgacgatagcgggccttgccatccatcgcttcgagcgg
atggacgtgaaggcggacggataccgcacgcgcacacggcgtacgccgctgcggctcgtc
agctag
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integrated database retrieval system
