Sphingobium amiense: SAMIE_1012600
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Entry
SAMIE_1012600 CDS
T06684
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sami
Sphingobium amiense
Pathway
sami03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMIE_1012600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sami03019
]
SAMIE_1012600
03016 Transfer RNA biogenesis [BR:
sami03016
]
SAMIE_1012600
Enzymes [BR:
sami01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SAMIE_1012600
Messenger RNA biogenesis [BR:
sami03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAMIE_1012600
Transfer RNA biogenesis [BR:
sami03016
]
Prokaryotic type
tRNA degradation factors
SAMIE_1012600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
BBD97759
UniProt:
A0A494WBV4
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All DBs
Position
1468222..1470531
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AA seq
769 aa
AA seq
DB search
MASTQKHKKPVAKSKVRPAGFPTRDQVMAFITEADTPAGKREIAKAFGLKGQEKIALKAL
LRDMADEGLIDIGPARAFHKMGGVPKVTVLRIVDVDDTTLIATPERWEAEGQPAPRLRVV
ERGKRGALTIGDRILARTEEAGRGWIAHVMKKLAKASEELLGVVEEMADGKLWLRPVDKR
IRKDTPISDAGDAKPGDLVLAEPHGRPPRISARVTDILGDPFAPRSFSLIAIHKHGIPHV
FPDRVEEEAVKASALPLHEDRREDLRHLPILAIDPVDARDHDDAVWAAPDDDPANPGGYR
AIVAIADVSYYVRPGSALDKEARKRGNSVYFPDQVVPMLPHELSSDMCSLRAGQDRAAMA
CHLTVNAQGRVTAWRFTRAVIRVAAVLAYEDAQAAIDGTKDNDLLEPALKPLWACWALLR
KARAARDPLALDLPERRVVLDERGQIVSVAVRERLDAHMLIEDYMIAANVAAAKALEAKK
APVMYRVHEPPSRDKLVSLKDYLATFDISFALGQVVKPSTFNQLIAKIGEAEEKPQIMEM
ILRSQTQAYYSPQNMGHFGLALGSYAHFTSPIRRYADLLVHRALVGAYGLELPAPKGKDI
PDRTALSQDDYENMGRVGEMISGHERRAMEAERETVDRYVAAYLAAHVGEIMPARITGVQ
NFGFFATVEGLGGDGLVPVSTMGAEHFFYDEAGRALQGVESGDRYTVGQRLDLRLADADP
INGSLRFELPDSPAPRGGPMKRDRTRPGIKRGRPANIRHMGAKRGRHKR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgacccagaagcacaagaagcccgtcgccaaaagcaaggtgcggcccgccgga
ttccccactcgcgatcaggtgatggccttcatcaccgaggcggatacgcccgccggcaag
cgcgaaatcgccaaggcattcggcctcaaggggcaggaaaagatcgcgctcaaggcgctg
ctcagggacatggccgacgaagggctgatcgacatcggcccggcgcgcgcctttcacaag
atgggcggcgtgcccaaggtcacggtgctgcgcatcgtcgacgtggacgacacgacgctg
atcgccacgcccgaacggtgggaggcggagggtcagcccgcgccccgcctgcgcgtggtg
gagcgcggcaaaaggggcgcgctcaccatcggcgaccgcatccttgcccgcacggaggag
gcagggcgcggctggatcgcacacgtcatgaagaagctcgccaaggcgagcgaggaactg
ctgggcgtcgtcgaggaaatggcggacggtaagctgtggctccgccccgtcgacaagcgc
atccgcaaggacacgccgatcagcgatgcgggcgacgcaaagcccggcgacctcgtcctc
gccgaaccccatggccgtcccccgcgcatttcggcgcgcgttaccgacattctcggcgac
ccctttgccccgcgcagcttcagcctgatcgcgatccacaaacatggcattccgcacgtc
ttccccgaccgggtagaggaggaggcggtcaaggcgtccgccctgcctctgcatgaagac
aggcgcgaggatctgcgccacctgcccatccttgccatcgacccggtcgatgcgcgcgac
catgacgatgccgtctgggccgcgcccgatgacgatccggccaatccgggcggctaccgg
gccatcgtcgccatcgccgacgtcagctattatgtccgccccggcagcgcgctcgacaag
gaagcgaggaagcgcggcaacagcgtctatttccccgatcaggtcgtgccgatgctgccg
cacgaactgtcgtcggacatgtgctcgctgcgcgcggggcaggaccgggcggcgatggcc
tgccacctgaccgtcaatgcgcagggcagggtgacggcatggcgcttcacccgcgccgtc
atccgcgtcgcggcggtgctcgcctatgaggatgcgcaggcggccatcgacggcacgaag
gacaacgatctgctcgaacccgcgctgaaaccgctctgggcctgctgggcgctgctgcgc
aaggcgcgggcggcgcgcgatccgctcgcgctcgacctccccgaacgccgcgtcgtgctg
gacgagcgcggccagatcgtcagcgttgcggtgcgggaacggctcgacgcgcatatgctg
atcgaggattatatgatcgccgccaacgtcgcggcggccaaggcgctggaagcgaagaag
gcgcctgtcatgtatcgcgtccacgaaccgcccagccgcgacaagctggtgtcgctgaag
gactatctcgccaccttcgacatatccttcgcgctgggtcaggtggtgaagccatcgacc
ttcaaccagttgatcgcgaagatcggcgaggcggaggaaaagccgcagatcatggagatg
atcctgcgcagccagacgcaggcctattacagcccgcagaatatggggcatttcggcctc
gcgctcggcagctacgcccatttcacctcgcccatccgccgctacgccgacctgctggtg
caccgggcgctggtcggagcctacggtctcgaactccccgcgcccaaggggaaggatatt
cccgaccgcacggcgctcagccaggacgattatgagaatatgggccgcgtgggcgagatg
atctcgggccatgagcgccgtgccatggaggcggagcgggagacggtcgaccgctatgtc
gccgcctatctcgccgcccatgtcggcgaaatcatgcccgcgcggatcacgggcgtgcag
aatttcggcttcttcgcgaccgtggaagggctgggcggcgacgggctggtgccggtgtcc
accatgggggcggaacatttcttctacgatgaggcgggccgggcgctgcagggcgtcgaa
agcggagatcgctatacggtcggccagcggctcgacctgcggctggcggatgccgatccg
atcaacggatcgctccgcttcgaactgcccgacagtcccgcgccacgcggcggtccgatg
aagcgcgaccgcacccgccccggcatcaaacgcggccgccccgccaacatccgccacatg
ggggcaaagcggggcaggcacaaacgctag
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