Sphingobium amiense: SAMIE_1020630
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Entry
SAMIE_1020630 CDS
T06684
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sami
Sphingobium amiense
Pathway
sami03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMIE_1020630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sami03021
]
SAMIE_1020630
03400 DNA repair and recombination proteins [BR:
sami03400
]
SAMIE_1020630
Enzymes [BR:
sami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMIE_1020630
Transcription machinery [BR:
sami03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMIE_1020630
DNA repair and recombination proteins [BR:
sami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMIE_1020630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Peptidase_M23
Vsr
Motif
Other DBs
NCBI-ProteinID:
BBD98562
UniProt:
A0A494WD09
LinkDB
All DBs
Position
2416998..2421281
Genome browser
AA seq
1427 aa
AA seq
DB search
MNELTNFANPIQKPETFDQIQISLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQALLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLADMQEVHQALYA
KAVTLHSKIISRVPQTDEAGNQYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFQAGISFGKDDMVIPDSKTTYVDETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIRAQPKDETGRMAPINSIYMM
AHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCTVVEEDCGTDKALEMKAIVQGGSVIASLGERILGRTTA
QDIVDSKDGSVVIPIGTLLDEAMIAQIEAIGTQAVKIRSPLICESKMGVCAKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLESVADGTIELRDMPTI
TDKQGRRLSLARNGEIAIIDSEGRERATHRLPYGATILFADGDKVAQGDRIAEWDPFTMP
VITEKPGIVKYQDLIDGKTLTEQTDEATGIAQRVVTEFRGSARSKEDLRPRLTLLDDQSG
EAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDNA
IIAKVSGRVQFLKDYKAKRKIAIVPEDGGEPVEYLIPKSKVIDVQEGDYVKRGDNLIGGS
PDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEIIESGDTTL
LVGEQVDREEMDEINSKLQPGFQPAAGKPVLLGITKASLQTRSFISAASFQETTRVLTEA
AVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAALRAALRSTSQVDLIAPR
SAAEEHAAELAQGPEAAIGDDPLGVVEGETHGTDADAGDYLLKSDGE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaacttcgccaatccgatccagaagccggaaaccttcgaccagatc
cagatcagtctggcttcgcccgagcgcatccggtcctggtccttcggcgagatcaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgctcgc
atcttcggtccgatcaaggattatgaatgcctgtgcggcaagtataagcgcatgaagtat
aagggcatcgtctgcgaaaaatgcggtgtcgaagtcacggtgtcgaaggtccgccgcgag
cgcatgggccatatcgaactggccgcgcctgtcgcgcacatctggttcctgaagtcgctg
ccctcgcgcatcggcctgctgctcgacatgcagttgaagcagcttgagcgcgtcctctat
ttcgaatcctacatcgttacagagccgggcctgaccccgctcgaaaagttccagcttctg
accgaagacgaactgctcgacgcgcaggacgaatatggcgaggacgccttctccgccggg
atcggcgcggaagcggtcaagcagatgctgatggacctcgaccttgagggcgagaagcag
gcgctgctggacgaactggccgtcaccaagtcggaactcaagcccaagaagatcatcaag
cgcctcaaggtggttgagtccttcctggaatcgggcaaccgccccgaatggatgatcctc
gacgtcgtgccggtcatcccgcccgaactgcgtccgctggtgccgctggacggcggccgc
ttcgcgacgtcggacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatggaactgcgcgccccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagcggtcgacgccctgttcgacaatggccgtcgcggccgcgtgatcaccggcgcg
aacaagcgtccgctgaagtccctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccg
gaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaagccc
ttcatctacgcccgcctcgacgccaagggtctgtccatgaccctcaagcaggcgaaaaaa
tgggtcgagaaggagcgcaaggaagtctgggacattctggacgaggtgatccgcgagcat
ccggtgatgctgaaccgcgcgccgacgctccaccgcctcggcattcaggcgttcgagcct
gtgctgatcgagggcaaggcgatccagctccaccccctcgtctgctcggccttcaacgcc
gacttcgacggcgaccagatggccgtgcacgttccgctttcgctggaagcccagctcgaa
gcccgcgtgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggcatctattatctgtcgatggaacgcgaaggc
gagccgggcgaaggcatgctgctggccgacatgcaggaagtgcatcaggcgctctatgcc
aaggcggtgacgctgcactcgaagatcatcagccgcgtgccgcagaccgacgaagccggc
aaccagtatatgaagcggttcgagaccactccgggccgcatgctgctgggcgaatgcctg
cccaagagccacaaggtgccattcgacgtggtcaatcgccttctcaccaagaaggaaatc
ggcgacgtcatcgaccaggtctatcgtcataccggccagaaggacacggtgctgttcgcc
gacgccatcatggcgctgggcttccgccacgcgttccaggccggcatcagcttcggcaag
gacgacatggtcatccccgacagcaagacgacctatgtcgatgagaccaaggcgctggtg
gccgattatgagcagcaatatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgatcaggtggcgaacgccatgatggacgaaatc
cgcgcccagcccaaggacgagaccggccgcatggccccgatcaactccatttacatgatg
gcgcattcgggtgcccgtggttcgcaggcccagatgaagcagctcgcgggcatgcgcggc
ctgatggccaagccttcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgtccttgaatatttcaactccacccacggcgcccgcaagggtctggccgac
accgcgctcaagacggcgaactcgggctacctgacccgccgtctggtcgatgtgtcgcag
gactgcaccgtcgtcgaggaggattgcggcaccgacaaggcgctggagatgaaggccatc
gtccagggcggcagcgtcatcgcttcgctcggcgagcgcattctgggccgcaccacggcg
caggacatcgtcgacagcaaggacggcagcgtggtgatccccatcggcaccctgctggac
gaagccatgatcgcccagatcgaggccatcggcacgcaggcggtgaagatccgcagccct
ctcatctgcgaaagcaagatgggcgtgtgcgccaagtgctacggccgtgacctcgcccgc
ggcaccccggtcaacatcggcgaagcggtcggcgtcatcgcggcgcagtccatcggcgag
ccgggcacgcagctcaccatgcggaccttccacatcggcggcgcggcgaacttcaacgaa
acgtcgaacctcgaatccgtggcggacggcacgatcgaactgcgcgacatgccgaccatc
accgataagcagggccgccgcctcagcctcgcccgcaacggcgagatcgcgatcatcgac
agcgagggccgcgagcgcgccacccatcgcctgccctatggcgcgaccatcctgttcgcc
gatggcgacaaggtcgcacagggcgaccgcatcgccgaatgggaccccttcaccatgccg
gtgattacggaaaagcccggtatcgtgaagtatcaggatctgatcgacggcaagacgctg
accgaacagaccgacgaagcgaccggcatcgcccagcgcgtcgtcacggaattccgtggc
tcggcccgttcgaaggaagacctccgtccgcgcctcaccctgctcgacgaccagtcgggc
gaagcggcccgctacatgctggccgtgggtgcgacgctgtcggtggacgacggtgcgcag
gtgcaggccggtgacgtgctggcgcgcgtcagccgcgaagcggccaagacccgcgacatc
accggcggtctgccgcgcgtcgccgaactgttcgaagcgcgcaagcccaaggacaatgcg
atcatcgccaaggtctccggccgcgtccagttcctcaaggactataaggcgaagcgcaag
atcgccatcgtccccgaagatggcggcgagccggtcgaatatctgatccccaagagcaag
gtgatcgacgttcaggaaggcgactatgtcaagcgcggcgacaacctgatcggcggttcg
cccgatccgcacgacatcctcgaagtgctcggcatcgagccgctggccgaatatctggtc
gcggaaatccaggaagtctatcgtctgcagggcgtgaagatcaacgacaagcacatcgag
acgatcgttcgtcagatgctgcagaaggtcgagatcatcgagtccggcgacaccaccctg
ctggtgggcgagcaagtcgaccgcgaggaaatggacgagatcaacagcaagctccagccc
ggcttccagccggcggcgggcaagccggtgctgctcggcatcaccaaggcttcgctgcag
acgcgctcgttcatctcggccgcgtccttccaggaaacgacccgcgtgctcaccgaagcg
gcggttcagggcaagaaggacacgctcgtcggtctgaaggaaaacgtcatcgtcggccgc
ctgatcccggcgggcacaggcgctggcatgaaccggatgcgcgtcgccgcctcgtcgcgt
gacgcggcgctgcgggccgccctgcggagcacgagccaggtggacctcatcgccccgcgc
agcgccgccgaagaacatgccgccgaactcgcgcagggtccggaagcggcgatcggcgac
gatccgctgggcgttgtcgagggcgaaacccacggcaccgacgcggatgcgggcgattac
ctgctgaagagcgacggcgaataa
DBGET
integrated database retrieval system
