Sphingobium amiense: SAMIE_1027620
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Entry
SAMIE_1027620 CDS
T06684
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
sami
Sphingobium amiense
Pathway
sami03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMIE_1027620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sami03400
]
SAMIE_1027620
DNA repair and recombination proteins [BR:
sami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMIE_1027620
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAMIE_1027620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
Microtub_bd
AAA_16
SWI2_SNF2
Orbi_NS3
UB2H
DUF2963
eIF3_p135
Motif
Other DBs
NCBI-ProteinID:
BBD99261
UniProt:
A0A494W4X9
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All DBs
Position
3190086..3192269
Genome browser
AA seq
727 aa
AA seq
DB search
MTIQIRTDLSEPETGQSFVPHRPARPEKSEGGRAFKLVSDYEPSGDQPTAIAELVAAARA
GERDQVLLGVTGSGKTFTMAKTIEAMQRPALILAPNKILAAQLYGEFKSFFPENAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNESIDRMRHSATRALLERDDVIIVASVSCLYGIGS
VETYSAMTFSMKKGGIEDQREIIRKLVALQYKRNDAGFARGNFRVKGDNLEIFPSHYEDT
AWRVSFFGNEIEEIVEFDPLTGKKIASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELAER
LKELVAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
ENALLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTV
SVSATPGPWEMEQTGGVFSEQVIRPTGLIDPPVEIKPVEDQVDDLINECRKVAAQGYRTL
VTTLTKRMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGL
DIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADRITGSMERALNETSR
RREKQQAYNEAHGITPTTIKRNIGDIIAHVASKDQVTVDTGLDDRPHMVGHNLRAYIEEL
EKKMRAAAADLEFEEAGRIRDEIRKLEAEELGLPAEQQVAAPRGRATEGKPGTRKLRYGK
VQKKFGR
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgacaattcaaatccgcaccgacctgtccgaaccggagaccgggcagagctttgtcccg
caccggcccgcacgccccgagaagagcgagggcgggcgggcgttcaagcttgtgagcgat
tatgagccttcgggcgaccagccgaccgccattgcggaactggtcgcggcggcgcgggcg
ggcgagcgggatcaggtgctgctgggcgtcacgggttcgggcaaaaccttcaccatggcg
aagacgatcgaggcgatgcagcgcccggcgctgatcctcgcgcccaacaagatcctcgcg
gcgcagctctacggcgagttcaagagcttcttccccgagaacgccgtcgaatatttcgtc
agctattacgactattatcagcccgaagcctatgtgccgcggtcggacacctatatcgag
aaggaaagctcggtaaacgagagcatcgaccggatgcgccattcggccacccgcgcgctg
ctggagcgggacgacgtcatcatcgtcgcgtcggtatcctgtctctatggcatcgggtcg
gtcgaaacctattcggccatgaccttcagcatgaagaagggcgggatcgaggaccagcgc
gagatcatacggaaactggtcgcgctccagtacaagcgcaacgatgcagggttcgcgcgc
gggaatttccgcgtgaagggcgacaatctggagatttttccgtcgcactatgaggacacg
gcctggcgcgtcagcttcttcggcaacgagatcgaggagattgttgagttcgatccgctg
accggaaagaagatcgcgtcgctcgattacgtcaaggtcttccccaacagccaccatgtc
acccccggcccgacgctcaagcaggcgatggaggcgatccgcttcgaactggccgaacgc
ctcaaggaactggtggccgagggcaagctgctggaggcgcagcggctggagcagcgcacc
aatttcgacctggagatgatcgcggcgacaggatcgtgtgcggggatcgagaattacagc
cgcttcctgaccggccgcctgcccggcgagccgccgccgaccctgttcgaatatttgccc
gaaaacgcgttgctgttcgtggacgaaagccaccagaccgttccgcagatcggcgcgatg
gcgcgcggcgaccaccggcgcaagatcacgctggccgaatatggatttcgcctgccgtcc
tgcatcgacaatcgcccgttgcgcttcaacgaatgggacgcgatgcggccgcagacggtc
agtgtttccgccacgcccggtccttgggagatggagcagaccggcggcgtgttcagcgaa
caggtgatccgccccaccggcctgatcgacccgccggtcgagatcaagccggtcgaggat
caggtcgacgatctcatcaacgaatgccgcaaggtcgcggcccagggctaccgcacgctc
gtcaccacgctgaccaagcggatggcggaggatctgaccgagttcatgcatgaggcgggg
atcaaggtccgctacatgcatagcgacgtcgagacgctggagcgtatcgagctgatccgc
gatctgcggctgggcgtctatgacgtgctgatcggcatcaacctgctgcgcgaggggctg
gacattcccgaatgcgggctggtggcgatcctggacgcggacaaggagggctttttgcgc
tcggaaacctcgctcatccagaccatcggccgcgccgcgcgcaatgtcgaggggcgcgtc
atcctctacgccgaccgtattaccgggtcgatggaacgcgcgctcaacgaaacgtcgcgg
cggcgcgagaagcagcaggcctataacgaagcgcacggcatcacgccgaccacgatcaag
cgcaacatcggcgacatcatcgcccatgtggcatccaaggatcaggtcacggtcgacacg
ggcctcgacgaccgcccgcacatggtcggccacaaccttcgcgcctatatcgaggaactg
gaaaagaagatgcgcgcggcggcggccgatctggagttcgaggaagcgggtcgcatccgc
gacgaaatccgcaagctggaggcggaagagcttgggctgccggcggagcagcaggtcgcc
gcgccgaggggccgcgcgaccgagggcaagccggggacgcggaagctgcgatacgggaag
gtgcagaagaagttcgggcgatag
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