KEGG   Sphingobium amiense: SAMIE_1027620
Entry
SAMIE_1027620     CDS       T06684                                 
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
sami  Sphingobium amiense
Pathway
sami03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sami00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SAMIE_1027620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sami03400]
    SAMIE_1027620
DNA repair and recombination proteins [BR:sami03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SAMIE_1027620
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SAMIE_1027620
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII UVR DEAD AAA_30 Kinesin Microtub_bd AAA_16 SWI2_SNF2 Orbi_NS3 UB2H DUF2963 eIF3_p135
Other DBs
NCBI-ProteinID: BBD99261
UniProt: A0A494W4X9
LinkDB
Position
3190086..3192269
AA seq 727 aa
MTIQIRTDLSEPETGQSFVPHRPARPEKSEGGRAFKLVSDYEPSGDQPTAIAELVAAARA
GERDQVLLGVTGSGKTFTMAKTIEAMQRPALILAPNKILAAQLYGEFKSFFPENAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNESIDRMRHSATRALLERDDVIIVASVSCLYGIGS
VETYSAMTFSMKKGGIEDQREIIRKLVALQYKRNDAGFARGNFRVKGDNLEIFPSHYEDT
AWRVSFFGNEIEEIVEFDPLTGKKIASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELAER
LKELVAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
ENALLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTV
SVSATPGPWEMEQTGGVFSEQVIRPTGLIDPPVEIKPVEDQVDDLINECRKVAAQGYRTL
VTTLTKRMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGL
DIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADRITGSMERALNETSR
RREKQQAYNEAHGITPTTIKRNIGDIIAHVASKDQVTVDTGLDDRPHMVGHNLRAYIEEL
EKKMRAAAADLEFEEAGRIRDEIRKLEAEELGLPAEQQVAAPRGRATEGKPGTRKLRYGK
VQKKFGR
NT seq 2184 nt   +upstreamnt  +downstreamnt
atgacaattcaaatccgcaccgacctgtccgaaccggagaccgggcagagctttgtcccg
caccggcccgcacgccccgagaagagcgagggcgggcgggcgttcaagcttgtgagcgat
tatgagccttcgggcgaccagccgaccgccattgcggaactggtcgcggcggcgcgggcg
ggcgagcgggatcaggtgctgctgggcgtcacgggttcgggcaaaaccttcaccatggcg
aagacgatcgaggcgatgcagcgcccggcgctgatcctcgcgcccaacaagatcctcgcg
gcgcagctctacggcgagttcaagagcttcttccccgagaacgccgtcgaatatttcgtc
agctattacgactattatcagcccgaagcctatgtgccgcggtcggacacctatatcgag
aaggaaagctcggtaaacgagagcatcgaccggatgcgccattcggccacccgcgcgctg
ctggagcgggacgacgtcatcatcgtcgcgtcggtatcctgtctctatggcatcgggtcg
gtcgaaacctattcggccatgaccttcagcatgaagaagggcgggatcgaggaccagcgc
gagatcatacggaaactggtcgcgctccagtacaagcgcaacgatgcagggttcgcgcgc
gggaatttccgcgtgaagggcgacaatctggagatttttccgtcgcactatgaggacacg
gcctggcgcgtcagcttcttcggcaacgagatcgaggagattgttgagttcgatccgctg
accggaaagaagatcgcgtcgctcgattacgtcaaggtcttccccaacagccaccatgtc
acccccggcccgacgctcaagcaggcgatggaggcgatccgcttcgaactggccgaacgc
ctcaaggaactggtggccgagggcaagctgctggaggcgcagcggctggagcagcgcacc
aatttcgacctggagatgatcgcggcgacaggatcgtgtgcggggatcgagaattacagc
cgcttcctgaccggccgcctgcccggcgagccgccgccgaccctgttcgaatatttgccc
gaaaacgcgttgctgttcgtggacgaaagccaccagaccgttccgcagatcggcgcgatg
gcgcgcggcgaccaccggcgcaagatcacgctggccgaatatggatttcgcctgccgtcc
tgcatcgacaatcgcccgttgcgcttcaacgaatgggacgcgatgcggccgcagacggtc
agtgtttccgccacgcccggtccttgggagatggagcagaccggcggcgtgttcagcgaa
caggtgatccgccccaccggcctgatcgacccgccggtcgagatcaagccggtcgaggat
caggtcgacgatctcatcaacgaatgccgcaaggtcgcggcccagggctaccgcacgctc
gtcaccacgctgaccaagcggatggcggaggatctgaccgagttcatgcatgaggcgggg
atcaaggtccgctacatgcatagcgacgtcgagacgctggagcgtatcgagctgatccgc
gatctgcggctgggcgtctatgacgtgctgatcggcatcaacctgctgcgcgaggggctg
gacattcccgaatgcgggctggtggcgatcctggacgcggacaaggagggctttttgcgc
tcggaaacctcgctcatccagaccatcggccgcgccgcgcgcaatgtcgaggggcgcgtc
atcctctacgccgaccgtattaccgggtcgatggaacgcgcgctcaacgaaacgtcgcgg
cggcgcgagaagcagcaggcctataacgaagcgcacggcatcacgccgaccacgatcaag
cgcaacatcggcgacatcatcgcccatgtggcatccaaggatcaggtcacggtcgacacg
ggcctcgacgaccgcccgcacatggtcggccacaaccttcgcgcctatatcgaggaactg
gaaaagaagatgcgcgcggcggcggccgatctggagttcgaggaagcgggtcgcatccgc
gacgaaatccgcaagctggaggcggaagagcttgggctgccggcggagcagcaggtcgcc
gcgccgaggggccgcgcgaccgagggcaagccggggacgcggaagctgcgatacgggaag
gtgcagaagaagttcgggcgatag

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