Sphingobium amiense: SAMIE_1028680
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Entry
SAMIE_1028680 CDS
T06684
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
sami
Sphingobium amiense
Pathway
sami03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAMIE_1028680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sami03400
]
SAMIE_1028680
Enzymes [BR:
sami01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
SAMIE_1028680
DNA repair and recombination proteins [BR:
sami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
SAMIE_1028680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
BBD99367
UniProt:
A0A494W9T0
LinkDB
All DBs
Position
complement(3309701..3310582)
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AA seq
293 aa
AA seq
DB search
MPPERGSYFVPFPCDRLRNEARNPSWLGMADTLSICSWNINSVRARIDIVEQLLRDEAPD
ILCLQETKVVNDIFPAAMFRRMGYVHQVLNGQRMHHGVAILSKVPIHEDDRFDWQANGEA
RHVGVRLDNGVRIENVYVPAGGDVPDRTVNPKFGQKLDFLERMIQWSAALDNKPTILTGD
FNIAPLECDVWSHRQLIDVVSHTPVECEILGRLQASNDWVDIGRHFHPAPARLYTWWSYR
AKDWAASDRGRRLDHMWMTRDVADRAVSHRVVEPARSWVKPSDHIPIITDFVF
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcccccggagcgggggtcttactttgtccccttcccctgcgaccgcttgcgcaacgaa
gcgcgcaaccctagttggcttggcatggccgacacgctctccatctgctcctggaacatc
aacagcgtccgggcgcgcatcgacattgtcgaacagttgctgcgcgacgaagcgccggac
atattgtgccttcaggaaacgaaggtcgtgaacgacattttcccggccgcgatgttccgc
cgcatgggctatgtgcatcaggtgctgaacggccagcggatgcatcatggcgtcgcgatc
ctgagcaaggtgccgatccacgaggacgaccggttcgactggcaggccaatggcgaggcg
cgccatgtcggcgtgcggctcgataacggcgtgcggatcgagaatgtctatgtgcccgca
ggcggcgatgtgcccgaccgcaccgtcaatccgaaattcgggcagaagctcgatttcctc
gaacgcatgatccagtggtcggccgcgctcgacaacaagccgacgattttgaccggcgat
ttcaacatcgccccgctcgaatgcgacgtgtggagccacaggcagttgatcgacgtggtc
agccacacgccggtcgaatgcgaaatcctcggccggcttcaggcctcgaacgactgggtg
gacatcggccgtcacttccaccccgcgcccgcgcggctctacacctggtggagctatcgc
gcgaaggactgggccgcgtccgaccgggggcggcggctcgatcatatgtggatgacgcgc
gacgtggcggacagggcggtcagccaccgcgtcgtcgaacccgcgcgcagttgggtgaag
ccgtcggaccatatccccatcatcaccgatttcgtcttctga
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