Sphingobium amiense: SAMIE_1029150
Help
Entry
SAMIE_1029150 CDS
T06684
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sami
Sphingobium amiense
Pathway
sami03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMIE_1029150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sami03021
]
SAMIE_1029150
03019 Messenger RNA biogenesis [BR:
sami03019
]
SAMIE_1029150
Transcription machinery [BR:
sami03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SAMIE_1029150
Messenger RNA biogenesis [BR:
sami03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAMIE_1029150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
Spore_III_AA
S1CSD-TOTE-2
AAA_22
GpA_ATPase
AAA_25
NACHT
AAA_14
Fungal_virus_P2_C
AAA
Motif
Other DBs
NCBI-ProteinID:
BBD99414
UniProt:
A0A494W4D8
LinkDB
All DBs
Position
complement(3354999..3356255)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKKTVPADLVTMAEELGVEGASTLRKQDLMFAILKAEAENGEQIMGEGTIEVLAD
GFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLNTVN
FDDPDAVRHRVNFDNLTPLYPEQKLRLDTLDPTIKDKSARVIDIVSPQGKGQRTLIVAPP
RVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVEKPTLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFATMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcaaggacctcaagaaaaccgtccccgccgacctcgtcaccatggctgaggaa
ctgggcgtggaaggcgcatcgacgctgcgcaagcaggatctgatgttcgccatcctcaag
gcggaggccgaaaatggcgaacagatcatgggcgagggcacgatcgaggtgctggccgac
ggcttcggtttccttcgtagccccgaagccaatttcctcgccggtcccgacgacatctat
gtttcgcccaatcaggtccgcaagttcggcctgcgcaccggcgacacggtggaaggcgaa
atccgcgcgcccaaggatggcgagcgctatttcgcgctgacgaagctgaacaccgtcaat
ttcgacgatcccgatgccgtccgccatcgcgtcaatttcgacaatctgacgccgctctat
cccgaacagaagctgcggctcgacacgctcgacccgaccatcaaggacaagtcggcgcgc
gtcatcgacatcgtatcgccgcagggcaagggccagcgcacgctgatcgtcgcgccgccc
cgagtcggcaagaccgtgatgctccagaacatcgccaaggcgatcacggacaatcatccc
gaagtcttcctgatcgtcctcctcatcgacgagcgccccgaggaagtcaccgacatgcag
cgcagcgtgaagggcgaggtcgtttcctccacattcgacgagcctgccacccgccacgtg
caggtcgctgaaatggtgatcgaaaaggcgaagcgccttgtggaacacaaaaaggacgtc
gtgatcctgctcgattcgatcacccgcctcggtcgcgcctacaacactgtggtgccctcc
tcgggcaaggtgctgaccggcggcgtcgacgccaatgcgctccagcggcccaagcgcttc
ttcggcgcggcgcgcaatatcgaggaaggcggctcgctctccatcatcgccaccgcgctg
atcgacaccggcagccgcatggacgaagtcatcttcgaagagttcaagggcaccggcaac
tccgaaatcgtgctcgaccgcaaggtggccgacaagcgcatcttcccggcattggatgtc
ggcaagtccggcacccgcaaggaagaactgctggtcgaaaagccgacgctcagcaagatg
tgggtgctgcgccgcatcctcatgcagatgggcacggtcgatgccatggaattcctgctc
gacaagatgaaggattccaagaccaacgaggatttcttcgcgacgatgaaccagtaa
DBGET
integrated database retrieval system
