Sphingobium amiense: SAMIE_1031240
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Entry
SAMIE_1031240 CDS
T06684
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
sami
Sphingobium amiense
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sami03400
]
SAMIE_1031240
Enzymes [BR:
sami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMIE_1031240
DNA repair and recombination proteins [BR:
sami03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SAMIE_1031240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
RRG8
Motif
Other DBs
NCBI-ProteinID:
BBD99623
UniProt:
A0A494W4T6
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All DBs
Position
3637139..3639685
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AA seq
848 aa
AA seq
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MHYPFLVTDPRSGLQYRLTDTGLAELSLAPISAEWAPGRAIAEAPDPVWAESLANAPVET
ISAVTAALTDLVLATPDLKVPNVDHLPDSRAKRHLLALVALWQRLGDALPEGLAPISHVL
ALPHGSFLGSLPVVEGSLDPLAPAALQALFARLRDEFGTVPASAYTPRAAIGSRLHALQG
GVSAQDIEAGVLDDSLAFYGLRDPAACADFAAAKARALIESGVSAREIAVLSGDDLRQIA
RAFSAQGVPLSGLPGQLPERDVIGETALHLALAKRPPTPAMVLASLALSPLMPWSVQTGR
DLAEGLMNGDFRGTILTGTPAHKELWDDIRASAGSLQQLRFLLDRICERIGQGDQVRARL
TVPPGEGSPDWEAILRGIQVMPPTVADPDRNLEGASLWSAFETPWRPCRHLIVSDFTDGL
YPTRPRANPLFLDSEIAAIRDATGLQLRGRAEGLAQGLQIFDQQLQAVSESVTFLIPWRD
LAGGRLQPSAGLSLVARAVAGVEDASDLIIDLSRLNPADWPVAYHTLIPVPEPANLPEAL
DFPGHDLLSLRRRVDGTAKPQSPSRLETLLVSPLAWLLAEVGAEDMSWSAEELDVMAKGN
IAHDVFENVFLKDQPIPEPEALATAIPEAYGRALTRHAGYLRSPSWEMERRGLEREIMAA
ALRWRDHLLALKARIIGNEIWLAGEAHGINLHGKADAILELPDGALLIIDHKKSGTKGRR
QRMEAGWDLQAGLYADMIARPMRREGDGMDPLIGRKVAVAYHLMNDGGLLTSGLVLPEGS
PARDMGDAVNAGAVAKLAERLAELGAGRVVLNTSEDAAFFKKEAGFTPYALTDGSALVTA
FIRPVEEE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgcactaccccttcctcgtcactgatccgcgctccggcctgcaataccgcctgaccgat
accggtcttgccgaattgtcccttgcccccatttctgccgaatgggcgccggggcgtgcc
attgccgaagcgcctgacccggtctgggccgaaagtcttgccaatgcgcctgtcgagacg
atctcggcggtgaccgccgcgctgacggatcttgtgctggccacgccggatctgaaggtg
ccgaacgtcgatcacctgccagacagccgcgcaaagcggcatctcttggcgctggtcgcg
ttgtggcaaaggttgggggatgcgctgccagaggggctggcaccgatttcccatgtgctg
gccctgccgcatgggtcgttcctgggctcgttgccggtggttgaaggttcgctggatcct
ctagctcctgcggcgctgcaggcgctttttgcccggttgcgggacgagttcggcactgtt
cccgcaagcgcctatacgccccgggccgcaatcggcagccgcctgcacgcgttgcaaggc
ggtgtttcagcgcaggatatcgaggccggggttctggatgacagcctcgcgttctatggt
ctgcgcgatcccgccgcctgcgccgatttcgccgccgccaaagcccgggcgctgattgag
tccggcgtttcggcccgtgaaatcgccgtgctgtcgggcgatgatctgcgccagatcgcg
cgcgctttctcagcccagggagtgccgctctcgggtcttccgggccaattacccgagcga
gatgtcattggcgagaccgcgctgcatctggccctcgcgaaacgcccgccgaccccggct
atggttctggcgagcctcgcgctttctcccctgatgccctggtccgtccagaccgggcgc
gatctcgcagaaggtctgatgaatggcgatttccgagggaccatcctcactggcacgccc
gcgcataaggaactgtgggacgatatccgcgcttcggccggcagcctgcagcaactgcgc
ttcctgctggaccggatctgcgagcggatcgggcagggcgatcaggtgcgcgcgcggctg
accgtgccgcccggcgagggaagccccgattgggaggcgatcctgcgtggcattcaggtc
atgccgcccacggttgcggaccccgaccgcaatcttgaaggcgccagcctttggtctgcc
ttcgagacgccctggcgcccgtgccgccatttgatcgtcagcgatttcaccgacgggctc
tatcctacccgtccgcgcgccaatccgctgtttctcgacagcgagattgcggcgatccgc
gatgccaccggccttcaactccgtggcagggccgaagggttggcgcagggccttcagatc
tttgaccagcagcttcaggccgtatccgaaagcgtcacattcctgatcccctggcgcgat
ctggcaggcgggcgcttgcaaccctcggcggggctgtcgctcgtcgcgcgggcggtggcg
ggcgtcgaggatgccagcgatctgatcatcgatctgtcgcggctgaacccggcggactgg
ccggtcgcatatcacacactgattccggtgccggaacctgcgaacttgcccgaggctctc
gatttcccggggcatgaccttctgtccctgcggcggcgcgttgacggcaccgccaaaccg
caatcgccttcgcggctcgagacgctgctggtcagccctctcgcctggcttctggccgag
gtcggggccgaggatatgtcctggtctgccgaggaactcgacgtgatggccaagggcaat
atcgcccatgatgtctttgaaaatgtctttctcaaagaccaaccgatccccgaaccggag
gcgctggcaactgccatccccgaggcctatggccgggcgctgacccggcacgcgggttat
ctgcgcagcccctcatgggagatggagcgtcgcgggctggagcgtgagatcatggcggcg
gccctgcgctggcgcgaccatctgcttgcgctgaaagcgaggatcatcggcaatgaaatc
tggctggccggtgaggcgcatggcatcaatctgcatggcaaggccgacgcgatccttgaa
ctgcctgatggtgcgctcttgatcatcgatcacaagaaaagcggcaccaagggccgacgg
cagcggatggaggcgggctgggatctgcaggcagggctttacgccgatatgatagcgcgg
cccatgcggcgcgagggtgacggcatggacccgctgatcggccgcaaggtggcggtcgcc
tatcacctgatgaatgatggcgggctgctgacttcgggtttggtcttgcccgagggctcg
cccgcccgcgacatgggcgatgcggtgaatgccggggcggtagccaagctggcggagcgc
ttggccgaacttggtgcaggacgggtcgtgctgaacacctctgaggatgcggccttcttc
aagaaagaagccggcttcaccccatatgcgctgaccgatggctccgcccttgtcaccgcc
ttcatccgcccggtcgaggaggaatga
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