Sphingobium amiense: SAMIE_1033290
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Entry
SAMIE_1033290 CDS
T06684
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sami
Sphingobium amiense
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sami03016
]
SAMIE_1033290
Enzymes [BR:
sami01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SAMIE_1033290
Transfer RNA biogenesis [BR:
sami03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SAMIE_1033290
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
BBD99828
UniProt:
A0A494W9I4
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All DBs
Position
complement(3876420..3877586)
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AA seq
388 aa
AA seq
DB search
MQIHPLITDSKTLSDFCARIAQSPYIAVDTEFMRENSYWPELCLVQVADPNEAAAIDPKA
PGLDLKPLLDLLVDNEDVLKVFHAGGQDIEIVHNLTGKTPHPMFDTQIAAMALGLGEQIG
YGNLVDAWMGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLDELRKTGRGD
WLDQEMERISDPSNYENDPQQAWQRVRIASKKPDVLGRLKALAAWRETEARDKNLPRGRI
VKDETLADMASHPPRNQEDLGKVRGLSATWKTNDIGARLMNALAKHQPLSRDEMPDREPR
RPGLGKDGALVADLLKLLLKIRSRDINVAARLIARTDDIDALAAGVREGLSILEGWRYEQ
FGRDAVDLVEGRMAFAVKNGRLKMTRTE
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatccatccgctgattaccgacagcaagacgctttccgatttctgcgcccgcatc
gcccaatcgccctacatcgccgtcgataccgagttcatgcgggaaaacagctattggccc
gagctgtgcctggtgcaggtggccgatcccaatgaggcagccgccatcgaccccaaggcg
ccgggtctggacttgaagcccctgctcgatctgctggtggacaatgaggatgtgctcaag
gtctttcatgccggcgggcaggatattgagatcgtccacaacctgaccggcaagacgccg
catccgatgttcgacacccagatcgcggcgatggcattggggctgggcgagcagatcggc
tatggcaatctggtcgatgcgtggatgggggtgcagctcgacaagggcgcgcgcttcacc
gactgggcgcggcggccgctcgacaagaggcagatcgactatgcgatcggcgatgtcact
tacctgatccagattttccccaagatgctggacgaactgcgcaagaccgggcgcggcgac
tggctggatcaggagatggagcggatcagcgatccgtccaattacgagaatgacccgcag
caggcgtggcagcgcgtgcgcatcgccagcaagaagcccgacgtgctcgggcggctcaag
gcgctcgccgcatggcgcgaaacggaagcgcgcgacaagaacctgccgcgcggccgcatc
gtcaaggacgagacgctggcggacatggccagccatccgccgcggaaccaggaagacctc
ggcaaggtgcgcgggctttccgccacatggaagaccaacgacatcggtgcgcggctgatg
aacgcactggcgaagcatcagccgctttcgcgcgacgaaatgcccgaccgcgaaccgcgc
cgcccgggactgggcaaggacggggcgctggtcgcggacctgctcaagctgctgctcaag
atccggtcgcgcgacatcaatgtggcggcgcggctgatcgcgcggaccgacgacatcgac
gcgctggcggcgggcgtgcgcgaggggctgtcgatcctcgaaggctggcgctacgagcag
ttcgggcgcgatgcggtcgatctggtcgaagggcgcatggcgttcgctgtgaagaacggg
cggctcaagatgacgcgcaccgaatga
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