Sphingobium amiense: SAMIE_1034190
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Entry
SAMIE_1034190 CDS
T06684
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sami
Sphingobium amiense
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sami03016
]
SAMIE_1034190
Enzymes [BR:
sami01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SAMIE_1034190
Transfer RNA biogenesis [BR:
sami03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SAMIE_1034190
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
BBD99918
UniProt:
A0A494W9T1
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All DBs
Position
3999039..3999656
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AA seq
205 aa
AA seq
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MTVYFHEEDLPEGVLAQGPVAVDTETMGLITPRDRLCVVQISDGKGDEHLIRFGPNSDYA
APNLKAVLADPARLKLYHFGRFDIAAIQHYLGVVAAPAYCTKIASRLIRTYTDRHGLKEL
VRELLGQDISKQQQSSDWGGPVLSDAQKDYAASDVRYLHQLRAELDKRLVREGRMELAQA
CFDFLPHRAALDLAGWPEIDIFAHM
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtctatttccatgaagaagacctgcccgaaggcgtgctggcgcaagggccggtc
gccgtcgataccgaaacgatgggcctcatcacgccgcgcgaccggctgtgcgtggtccag
atcagcgacgggaagggcgacgagcatctgatccgcttcggcccgaacagcgactatgcc
gcgccgaacctgaaagccgtgctggccgacccggcgcggctcaaactctaccatttcggg
cggttcgacatcgcggcgatccagcattatctgggcgtcgtcgccgcacccgcttactgc
accaagatcgcgtcgcgcctcatccgcacctataccgaccgccatggcctcaaagaactg
gtgcgcgaactgctggggcaggacatcagcaagcagcagcagtcgagcgactggggcggg
ccggttctgtccgacgcgcagaaggattatgccgcgtccgacgtgcgttacctgcaccag
ctccgagccgaactggacaagaggctggtgcgcgaagggcggatggaactggcgcaggcc
tgtttcgatttcctgccgcatcgcgccgcgctcgatctggctggatggccggagatcgac
atcttcgcgcatatgtaa
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