Sphingobium amiense: SAMIE_1035410
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Entry
SAMIE_1035410 CDS
T06684
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sami
Sphingobium amiense
Pathway
sami03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMIE_1035410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sami03021
]
SAMIE_1035410
03400 DNA repair and recombination proteins [BR:
sami03400
]
SAMIE_1035410
Enzymes [BR:
sami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMIE_1035410
Transcription machinery [BR:
sami03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMIE_1035410
DNA repair and recombination proteins [BR:
sami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMIE_1035410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
TmoB
IDH
Motif
Other DBs
NCBI-ProteinID:
BBE00041
UniProt:
A0A494WG30
LinkDB
All DBs
Position
complement(4146601..4147665)
Genome browser
AA seq
354 aa
AA seq
DB search
MTVNMKNWQELKKPNSLEIKASGDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNIKQVALKMEGEGPKRLQLSATGPAVVKAGDI
SVVGDIEVMNPDLVICHLDQGATLNMELTADVGKGYVPAVANRPADAPIGLIPVDALYSP
VRQVAYKVDNTRVGQELDYDKLSLTVETDGTVTPEDAVAYAARILQDQLQLFVHFEDALP
VAGPSASHAAAAASSEGESDTNQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQKT
EAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatgaagaactggcaggaattgaagaagcccaacagccttgagatcaag
gcatcgggcgacggcaagcgcaaggcgaccttcgtcgccgaaccgctggagcgcggcttc
ggcctgacgctcggcaacgcgctgcgccgggttcttctgtcctcgctccagggcgcggcg
gtcacctcgatcaagatcgagaacgtcctgcatgaattctcgtcgctcgccggcgtgcgc
gaggacgtgaccgacatcgtcctcaacatcaagcaggtcgcgctgaagatggaaggcgaa
gggccgaagcgccttcagctttccgccaccggtcccgccgtggtgaaggccggcgacatc
agcgtcgtgggcgatatcgaagtgatgaaccccgatctggtgatctgtcacctcgatcag
ggcgcgacgctcaacatggaactgaccgccgacgtcggcaagggctatgtccccgccgtc
gccaaccgcccggccgatgcgccgatcggcctgatcccggtcgatgcgctctattcgccc
gtccgtcaggtcgcctacaaggtggacaacacccgcgtcggtcaggaactggactatgac
aagctgtcgctgacggtcgagaccgacggcacggtgacgcccgaggacgcggtggcctat
gccgcgcgcatccttcaggaccagctccagctcttcgtccacttcgaggacgcgctgccc
gtcgccggtccttcggcgagccatgcggcggccgccgcttcgtcggaaggcgaaagcgac
accaaccagatcaaccgctacctgctcaagaaggtggacgaactggaactgtcggtccgc
tcggccaactgcctcaagaacgacaacatcatctatatcggcgatctggtccagaagacc
gaagccgagatgctgcgcacccccaatttcggccgcaagtcgctgaacgaaatcaaggaa
gtgctgtcgtccatgggcctgcgccttggcatggacatccccggctggccgccggagaat
atcgaggaaatggccaagaagctcgaacaggagctgctgggctga
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