Sphingobium amiense: SAMIE_1036140
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Entry
SAMIE_1036140 CDS
T06684
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sami
Sphingobium amiense
Pathway
sami03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAMIE_1036140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sami03400
]
SAMIE_1036140
Enzymes [BR:
sami01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SAMIE_1036140
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SAMIE_1036140
DNA repair and recombination proteins [BR:
sami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SAMIE_1036140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
BBE00114
UniProt:
A0A494W6A6
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All DBs
Position
4220149..4220961
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AA seq
270 aa
AA seq
DB search
MPELPEVETTVAGLRSVLEGDTLTRVEPRRADLRFPIPVDLRQRLTGARVTGLSRRAKYG
LVETDRGDMMIFHLGMSGRWRIDPAEIGAHDHLLIETGRGRLLALNDPRRFGSLDLVRSD
AWEAYLPFTRMGPEPLGADFDTDRLAAALAGKATSIKAALLDQRIVAGLGNIYVCEALNM
AGIAPTRPAGKIGRARLALLVEAIRTVLTAAITAGGSTLRDYARPDGELGYFSKQWRVYG
REGEVCPCGGVVRRRVDGGRSTFYCPKCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccagagcttcccgaagtcgaaaccaccgtcgcgggtctccgatccgtgctggagggc
gatacgctcacccgcgtcgagccgcgccgcgccgacctgcgcttccccatccccgtcgac
ctgcgccagcggctgacgggcgcgcgcgtcacggggctgtcgcgccgcgccaaatatggc
ctcgtcgaaaccgaccggggcgatatgatgatcttccacctcggcatgtccgggcgttgg
cgcatcgacccggcggagatcggcgcgcacgatcatctgctgatcgaaaccggcaggggc
cggctgctggcgctcaacgacccgcgccgcttcggatcgctcgacctcgtgcggtcggat
gcatgggaagcctatctgcccttcacccggatgggaccggagccgctgggcgcggatttc
gacacggaccgcctcgccgccgcgctcgcgggcaaggcgacctcgatcaaggcggcgctg
ctcgaccagcggatcgtcgcgggcctcggcaacatctatgtctgcgaagcgctcaacatg
gcgggcatcgcgcctacgcgcccggcggggaagatcggccgtgcgcggctcgccctgctg
gtggaggcgattcgcaccgtgctcaccgccgccatcaccgccggaggatcgacgctccgc
gattatgcgcggccggatggggaactgggctatttctcgaaacagtggcgcgtctatggc
cgcgagggggaggtgtgcccctgcggcggcgtggtgcggcggcgagtcgacggcgggcgc
tccaccttctattgcccgaaatgccagaaatag
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