Sphingobium amiense: SAMIE_2000420
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Entry
SAMIE_2000420 CDS
T06684
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sami
Sphingobium amiense
Pathway
sami03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMIE_2000420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sami03019
]
SAMIE_2000420
03110 Chaperones and folding catalysts [BR:
sami03110
]
SAMIE_2000420
03029 Mitochondrial biogenesis [BR:
sami03029
]
SAMIE_2000420
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sami04147
]
SAMIE_2000420
Enzymes [BR:
sami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SAMIE_2000420
Messenger RNA biogenesis [BR:
sami03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SAMIE_2000420
Chaperones and folding catalysts [BR:
sami03110
]
Heat shock proteins
HSP60 / Chaperonin
SAMIE_2000420
Mitochondrial biogenesis [BR:
sami03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SAMIE_2000420
Exosome [BR:
sami04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SAMIE_2000420
Exosomal proteins of other body fluids (saliva and urine)
SAMIE_2000420
Exosomal proteins of breast cancer cells
SAMIE_2000420
Exosomal proteins of colorectal cancer cells
SAMIE_2000420
Exosomal proteins of bladder cancer cells
SAMIE_2000420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Pho88
SHOCT-like_DUF2089-C
Motif
Other DBs
NCBI-ProteinID:
BBE00156
UniProt:
A0A494WGM7
LinkDB
All DBs
Position
pSAMIE_2:complement(55057..56676)
Genome browser
AA seq
539 aa
AA seq
DB search
MAAKEVKFASDARDRMLRGVDTLANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEI
ELKDKFENMGAQMLREVANKQNDKAGDGTTTATVLAQSIVREGSKAVAAGMNPMDLKRGI
DLAVTTVVEDLKAHAKKVSANSEIAQVATISANGDAEVGTILAEAMEKVGNEGVITVEEA
KSLATELETVEGMQFDRGYLSPYFVTNAEKLKVELEDPYILIHEKKLSNLQALIPLLEQV
VQSGRPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAVLTAGSV
VSEELGTKLENVTLGMLGRAKKVIIDKDNTTVVDGAGAREEIDARVAQIRAQIETTTSDY
DREKLQERVAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGILPGGGIALL
RALKALDGLKAANDDQQSGIDIIRRALRAPVRQICDNAGEDGAFIVGKLLESDDYNWGFN
AASGQYEDLVKSGVIDPAKVVRTALQDAASVASLLITTEALVAELPKDEKAAPMPAMDY
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaaggaagtgaagttcgcctcggacgcgcgcgatcgcatgctgcgcggcgtc
gatacgctggccaacgccgtcaaggtgacgctcggtcccaagggccgcaatgtggtcatc
gagaagagcttcggcgcgccgcgcatcaccaaggacggcgtcaccgtcgccaaggaaatc
gaactgaaggacaagttcgagaatatgggcgcacagatgctgcgtgaggtcgccaacaag
cagaacgacaaggccggtgacggcacgaccaccgccaccgtgctggcccagtccatcgtg
cgcgaaggctcgaaggcggtcgcggcagggatgaatcccatggacctgaagcgcggcatc
gacctcgccgtgacgacggtcgtcgaggacctcaaggcgcacgcgaagaaggtctcggcc
aacagcgagatcgcccaggtcgcgaccatctcggccaatggcgatgccgaagtgggcact
atcctcgcagaagcgatggaaaaggtcggcaatgagggtgtcatcaccgtcgaagaggcc
aagagcctcgcgaccgaactcgagaccgtcgagggcatgcagttcgatcgcggctatctc
tcgccttacttcgtgaccaacgccgagaaactgaaggtcgagctcgaggatccctacatc
ctcatccacgagaagaagctttcgaacctccaggcgctcattccgctgctcgagcaggtg
gtgcagtcgggccggccgctgctcatcatcgccgaggacgtggaaggcgaagcgctcgcc
acgctcgtcgtcaataagctgcgcggcggcctcaaggtcgcggccgtcaaggcgccgggc
tttggcgatcgtcgcaaggccatgcttgaggacatcgcggttctcaccgccggcagcgtg
gtcagcgaggaactcggcaccaagctcgagaacgtcacgctcggcatgctcggccgcgcc
aagaaggtcatcatcgacaaggacaacaccacggtcgtcgatggcgccggcgcgcgcgag
gagatcgacgcccgtgtggcgcagatccgggcgcagatcgagacgaccaccagcgactat
gaccgcgagaagctccaggagcgcgtggccaagcttgccggcggcgttgccgtgatccgc
gtgggcggcgcgaccgaggtcgaggtcaaggagaagaaggaccgggttgacgacgcgctg
cacgcgacccgcgccgctgtcgaggaaggcattctgccgggcggcggcatcgcgctgctc
cgcgcgttgaaggcgctcgacggcctcaaggcagccaatgacgaccagcagtccggtatc
gacatcattcgccgcgccctgcgcgcgccggtgcgccagatctgcgacaatgccggtgag
gacggcgcgttcatcgtaggcaagctgctcgaaagcgacgactataactggggcttcaac
gccgcgagcggccagtatgaggacctggtgaagtcgggtgtcatcgatcccgccaaggtc
gtgcgcaccgcgctgcaggatgcggcctcggtcgcatccctgctcatcacgaccgaagcg
ctggtcgccgagctacccaaggatgagaaggccgcgcccatgccggccatggactactga
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