Sphingobium amiense: SAMIE_3001130
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Entry
SAMIE_3001130 CDS
T06684
Name
(GenBank) RNA polymerase sigma factor
KO
K24073
RNA polymerase sigma factor CnrH
Organism
sami
Sphingobium amiense
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sami03021
]
SAMIE_3001130
Transcription machinery [BR:
sami03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMIE_3001130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
Sigma70_r4
HTH_1
Cas9_b_hairpin
PhyR_sigma-like
DUF134
HTH_10
Motif
Other DBs
NCBI-ProteinID:
BBE00407
UniProt:
A0A494WAN3
LinkDB
All DBs
Position
pSAMIE_3:129221..129787
Genome browser
AA seq
188 aa
AA seq
DB search
MTACLPDCSDGELAALALGGRQAAYGELVRRHQGWVHRLVRSHVGNRDEALDVTQASFVA
AFAALNRYDAARPFPVWMSRIVINKCHDWRRRRAVRNFFSHALALGEAEHVVDEAPLPDQ
AIGAEQQLAEAMKAIAALPASLKDTLVLRTIDEKSEAETAEILGISQKAVETRLYRARAR
LAEMLKKV
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgtgcctccccgactgctcggacggggagctcgcggctctggcgcttggaggc
cggcaagcggcctatggcgagctggtccgccggcatcagggctgggtgcaccgcctcgtg
cgcagccatgtcgggaaccgcgacgaagcgctcgacgtgacccaggcgagcttcgtcgcc
gccttcgccgcactcaaccgctatgacgctgcgcgaccttttccggtctggatgtcgcgg
atcgtcatcaacaaatgccatgactggcgccgccgccgcgcggtccgcaacttcttctcc
cacgcgctggcgctgggggaagccgaacatgtcgtcgacgaggcgccactacccgaccag
gcgatcggcgccgagcagcagctggcagaggccatgaaagcgatcgccgccctgcccgca
tcgctcaaggacacgctcgtcttgcggacgatcgatgagaaatcggaagccgaaaccgcc
gagattctcggcatcagccagaaggcagtcgagacccgcctctaccgcgcccgcgcacgc
ctcgcggaaatgttgaagaaagtttga
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