Streptococcus agalactiae NEM316 (serotype III): gbs0868
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Entry
gbs0868 CDS
T00104
Name
(GenBank) Unknown
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
san
Streptococcus agalactiae NEM316 (serotype III)
Pathway
san03030
DNA replication
san03410
Base excision repair
san03420
Nucleotide excision repair
san03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
san00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
gbs0868
03410 Base excision repair
gbs0868
03420 Nucleotide excision repair
gbs0868
03430 Mismatch repair
gbs0868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
san03032
]
gbs0868
03400 DNA repair and recombination proteins [BR:
san03400
]
gbs0868
Enzymes [BR:
san01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
gbs0868
DNA replication proteins [BR:
san03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
gbs0868
DNA repair and recombination proteins [BR:
san03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
gbs0868
NER (nucleotide excision repair)
GGR (global genome repair) factors
gbs0868
MMR (mismatch excision repair)
DNA ligase
gbs0868
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
gbs0868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
UPF0758_N
RTT107_BRCT_5
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CAD46512
UniProt:
Q8E5W1
LinkDB
All DBs
Position
892018..893976
Genome browser
AA seq
652 aa
AA seq
DB search
MENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVG
GLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKAEFPTASYMAELKIDGLSVSLTYV
NGILQVGATRGDGNIGENITENLKRVHDIPLHLDQSLDITVRGECYLPKESFEAINIEKR
ANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQEASPTQKETQDDVLKELESYGFS
VNHHRLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVVVYKAGDIIPAVLNVVMSKRNQQEVMLIPKLCPSCGSELVHFEDEVALRCINPLCPN
QIKERLAHFASRDAMNITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSAT
KIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGG
VIAKSLHTFFEKEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNE
AKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcgtatgaatgaattagtatctttgttgaatcagtacgcaaaagagtattat
acacaagataatcccacagtttctgacagtcaatatgaccagttatatcgagaattagta
gaattagaagagcaacatccagaaaacattttgccaaatagtcccacacatcgagtgggt
ggtttagttttagaaggctttgaaaaataccaacatgaatatcctttgtattcattgcag
gatgctttctcaaaagaagaattgatagcctttgataaacgtgttaaagcagagtttcca
actgcttcttatatggcagagctgaaaattgatggtctatctgtctcgttgacttatgta
aatggtattttacaggttggggcaacacgtggtgatggcaatattggagaaaatattact
gaaaatttaaagcgtgttcatgatattcctctacatttagaccaaagtttagatattact
gttcgcggagagtgctaccttcccaaagaatcttttgaagctattaacatagaaaaacgt
gcaaatggtgagcaggaatttgctaatcctaggaatgcagcagcaggaaccttgcgccaa
ttaaacacagggattgttgcgaaacgtaaattagcaacttttctttatcaagaagctagc
cctacgcaaaaagaaacacaagatgatgttttaaaagagctagaaagctatggcttttca
gtcaatcatcatcgtttaattagctcttctatggagaaaatttgggattttatccaaact
atagaaaaagatagaatttccctcccttatgatatcgatggtattgttattaaggttaat
agcttagcaatgcaagaagagttgggcttcactgtaaaggcacctcgttgggcgattgca
tataaattccctgctgaagaaaaggaagcagaaatattatctgttgattggacagttggg
cgaacaggagttgtaacaccaacagctaacctaactccagttcaactagcagggacaacc
gttagtagggccactctgcataatgtagattatattgccgaaaaagatatccgtattgga
gatactgttgttgtatacaaagcaggggatatcatccctgcagtcttaaatgtcgttatg
agtaagcgaaaccagcaagaagtcatgcttattcctaaactatgtccttcttgtggtagt
gaattagttcattttgaagatgaggtggctttacgttgtattaatccgctgtgccccaac
caaatcaaagaacgtttagctcattttgctagccgggatgctatgaatattacaggtttt
ggtccatccttagtcgaaaaattatttgatgctcatttaatagcagatgttgcagatatt
tatcgtttaagtatagaggatttattaactttagatggtattaaagagaaatctgcaact
aagatttatcatgcaatccaatcttcaaaagaaaattctgctgaaaaacttctttttggc
ctaggtattcgtcatgtgggaagcaaggcgagccgccttttattggaggaatttggtaat
ttgaggcaactaagtcaagcaagtcaagaaagtattgcctcaattgatggactaggaggt
gttattgccaaatcacttcatacgttctttgaaaaagaagaggtagataaactactagag
gaattaacttcctataacgttaattttaattatctaggaaaacgagttagtacagatgca
caactttcaggtttaacagtcgttttaaccggaaaacttgaaaagatgactcgtaatgaa
gcaaaagagaaattacaaaaccttggtgctaaggtgacaggtagcgtttctaaaaagact
gatttaattgttgcaggaagcgatgcaggaagtaaactaaccaaggctcaagatttaggg
attacaatacaagatgaagactggttactcaacctttaa
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