Sandaracinobacteroides saxicola: H3309_10505
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Entry
H3309_10505 CDS
T06739
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sand
Sandaracinobacteroides saxicola
Pathway
sand03030
DNA replication
sand03410
Base excision repair
sand03420
Nucleotide excision repair
sand03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sand00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H3309_10505 (ligA)
03410 Base excision repair
H3309_10505 (ligA)
03420 Nucleotide excision repair
H3309_10505 (ligA)
03430 Mismatch repair
H3309_10505 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sand03032
]
H3309_10505 (ligA)
03400 DNA repair and recombination proteins [BR:
sand03400
]
H3309_10505 (ligA)
Enzymes [BR:
sand01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H3309_10505 (ligA)
DNA replication proteins [BR:
sand03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H3309_10505 (ligA)
DNA repair and recombination proteins [BR:
sand03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H3309_10505 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H3309_10505 (ligA)
MMR (mismatch excision repair)
DNA ligase
H3309_10505 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H3309_10505 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
Zn_ribbon_NUD
Nlig-Ia
5_3_exonuc
DZR_2
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
QMW21825
UniProt:
A0A7G5IEN3
LinkDB
All DBs
Position
complement(2082755..2084869)
Genome browser
AA seq
704 aa
AA seq
DB search
MDGTDQLSEAEVAAELARLATEISAHNHAYYQGDAPTVSDADYDALMARNAALEAAFPHL
KRADSPSERVGAAVGSGFGKIVHARPMLSLDNGFSDADVAEFIGRVRRFLNLGDAAVALT
AEAKIDGLSLSLRYEAGVLVQAATRGDGAVGEDVTANVRTLRDVPQRLCGAPEVLEVRGE
VYLATADFAALNAAQEAAGAKRFANPRNAAAGSLRQLDAGITATRPLRFYAHGWGELSAP
LGVTQYETMRALAALGFAVSDTLIRAETLEEVLAHYRAIEAQRATLGYDIDGVVYKVDRL
DWQARLGQVARAPRWALAHKFPAERATTELLAIDIQVGRTGALTPVARLAPVTVGGVVVT
NATLHNEDEIARKDVRVGDRVQVQRAGDVIPQVLGWVGDAEAHAARAVFAYPDHCPACGS
AAVREAGEVVRRCTGGLTCPAQRVERLRHFVGRRALDIEGLGAERIELFAVLGWLASPAD
IYRLHRRRDELLAMKGWKPTSVDKLIESVEARRAPPLDRLLFGLGIRHVGEVTARDLARS
VGDWDGLCARLDALVAHAVAPALGETPEKVARREALELAALVGVAGIGPEVAGALRDFWA
EAHNQAALADLLAELTPAPVKLETVASEVAGLTIVFTGTLETMGRDEAKAQAERLGAKVA
GSVSANTDLLVAGRDAGSKLAKAAALGVRVIDEAGWAEIVKKSQ
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggacggaaccgatcagttgagcgaagcggaggtcgcggccgagctggcgcggctggcg
acggaaatctctgcgcacaatcatgcctattatcagggggatgcgccgacggtttcggat
gcggactatgacgcgctgatggcgcgcaacgcggcgctggaggcagcgttcccgcatctg
aagcgcgccgattcgccgagcgaacgggtgggagcggcggttggcagcggttttggcaag
atcgtgcatgcgcggccgatgctgagcctggacaatggcttcagcgacgccgacgtggcg
gagtttatcggccgggtgcggcggttcctgaacctgggggatgccgcggtggcgttgacg
gcggaggcgaagatcgatgggttgagcctgagcctgcgctatgaagccggcgtgctggtg
caggcggcgacgcggggcgatggcgccgtgggcgaggatgtgacggccaatgtgcggacg
ctgcgcgacgtgccgcagcggctgtgcggtgcgcccgaggtgctggaggtgcggggcgag
gtctatctggcgacggcggatttcgccgcgctgaacgcggcgcaggaggcggcgggggcg
aagcgtttcgccaacccgcgcaacgcggcggcggggagtttgcggcagctggatgccggc
atcacggcaacgcggccgctgcgtttctatgcccatggctggggcgagctgagcgcgccg
ctgggggtgacgcaatatgagacgatgcgggcgctggcggcgctgggctttgcggtcagc
gatacgctgatccgggcggagacgctggaggaggtgctggcgcattatcgcgcgatcgag
gcgcagcgggcgacactgggctatgacatcgacggcgtggtgtacaaggtcgaccggctc
gactggcaggcgcggctggggcaggtggcgcgggcgccgcgctgggcgctggcgcacaag
tttccggcggagcgggcgacgaccgaactgctggcgatcgacatccaggtggggcggacg
ggggcgctgaccccggtggcgcggctggcgccggtgacggtgggcggggtggtggtgacc
aacgcgacgctgcacaatgaggatgagatcgcccgcaaggatgtacgggtgggggatagg
gtgcaggtgcagcgcgccggcgacgtgatcccgcaggttctggggtgggtgggcgatgcc
gaggcgcatgcggcgcgggcggtgttcgcttatcccgatcattgcccggcgtgcggcagc
gcggcggtgcgggaggccggcgaggtggtgcgccgctgcacggggggcctgacctgcccg
gcgcagcgggtggaacggttgcggcatttcgtcgggcggcgggcgctggacatcgagggg
ctgggggcggagcggatcgagctgttcgccgtgttggggtggctggcgtcgccagcggac
atctatcggctgcaccgccggcgcgacgagttgctggcgatgaaggggtggaagccgacg
tcggtcgacaagctgatcgaatcggtggaggcgcggcgggcgccgccgctcgaccggctg
ctgttcgggctgggcatccggcatgtgggggaggtgacggcgcgcgacctggcgcggtcg
gtgggggactgggacgggctgtgcgcgcggctggatgcgctggtggcgcatgcggtggcg
ccggcgctgggggaaacgccggagaaagtggcgcggcgggaggcgctggagctggccgcg
ctggtgggggtggcgggcatcggcccggaggtggccggtgcgctgcgcgatttctgggcg
gaagcgcacaaccaggcggcgctggcggacctgctggcggagctgacgccggcgccggtg
aagctggagacggtggcgagcgaggtggcggggttgaccatcgtgttcaccggtacgctg
gaaaccatggggcgcgacgaggcgaaggcgcaggcggaacggctgggggcgaaggtggcg
ggcagtgtctcggcaaacaccgacctgctggtggcggggcgggatgcgggatcgaagctg
gcgaaggcagcggcgctgggggtgcgggtgatcgacgaagcgggctgggcggagatcgtc
aaaaaatcgcaataa
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