Streptomyces antimycoticus: QR300_14105
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Entry
QR300_14105 CDS
T09335
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sant
Streptomyces antimycoticus
Pathway
sant03030
DNA replication
sant03410
Base excision repair
sant03420
Nucleotide excision repair
sant03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QR300_14105 (ligA)
03410 Base excision repair
QR300_14105 (ligA)
03420 Nucleotide excision repair
QR300_14105 (ligA)
03430 Mismatch repair
QR300_14105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sant03032
]
QR300_14105 (ligA)
03400 DNA repair and recombination proteins [BR:
sant03400
]
QR300_14105 (ligA)
Enzymes [BR:
sant01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QR300_14105 (ligA)
DNA replication proteins [BR:
sant03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QR300_14105 (ligA)
DNA repair and recombination proteins [BR:
sant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QR300_14105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QR300_14105 (ligA)
MMR (mismatch excision repair)
DNA ligase
QR300_14105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QR300_14105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WJD97025
LinkDB
All DBs
Position
complement(3345588..3347786)
Genome browser
AA seq
732 aa
AA seq
DB search
MAGEQQSKVPAEVRERHARLAEQIEEHRFRYYVKDAPVVSDAEFDKLMRELEALEEETPA
LRTPDSPTQKVAGAYETAFSEVEHRERMLSLDNAFDDDELATWADRIAKELGSGAYHFLC
ELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRIPALVEVRG
EVFLARERFEELNAGLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGAREG
FDIDRLSQAYELLHEWGLPTAAHFTVVDTIEAVREYIAYYGDSEHRHSVEHEIDGAVVKL
DEIPLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGS
EVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAACPEC
DTPLQPAKEGDVDLRCPNSRSCPAQLRERIFYLAGRKSLDIENLGYVAAAALTQPLEPTD
PPVKDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEEKVVTFFATQKGEAKKNALA
MLANIEAAKERPLARIITGLSIRHVGPVAATALAREFRSLDRIAEAGEEELAAVEGVGPT
IAASVKEWFAVDWHREILEKWRRAGVRLEEEGGEDEGPRPLESLTVVVTGTLQSYTRDGA
KEALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQVKVPVLDEDGFGVLLEQGPDAAR
EVAMTPPEESAE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcagtcgaaggtccccgccgaggtgcgggagaggcacgccaggctc
gctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgcgcccgtcgtcagc
gacgcggagttcgacaagctcatgcgcgagctggaggcgctggaggaggagacccccgcg
ctccgtacgcccgactcgccgacccagaaggtcgcgggggcgtacgaaacggcgttctcc
gaggtcgagcaccgcgagcggatgctcagcctggacaacgcgttcgacgacgatgagctg
gccacctgggcggaccgcatcgccaaggagctgggcagcggcgcgtaccacttcctgtgc
gagctgaaggtggacggcctcgcggtcaacctcacctatgagcacgggcggctgacccgt
gccgcgacccgcggcgacggccgcaccggcgaggacatcacccccaatgtgcgcacgatc
gccaagatccccaaccggctgacgggcgaccggatcccggcgctggtggaggtgcgcggc
gaggtcttcctggcccgcgagcggttcgaggagctgaacgccgggctggtcgaggcgggc
aagccgccgttcgccaacccccggaacgcggcggcgggttcgctgcgccagaaggacccg
aaggtcaccgcgtcccggccgctggacatggtggtgcacggcatcggcgcgcgcgagggc
ttcgacatcgatcggctgtcgcaggcgtacgagctgctgcacgagtgggggctgcccacc
gccgcccacttcacagtggtggacacgatcgaggccgtgcgcgagtacatcgcgtactac
ggggacagcgagcaccggcactcggtggagcacgagatcgacggcgcggtcgtcaagctg
gacgagatcccgctgcagggtcggctcggctccacctcgagggcgccgcgctgggcgatc
gcctggaagttcccgcccgaggaggtcaacaccaagctggtcgacatccgggtgggcgtg
gggcgcacggggcgggtgacgccttatgcggtggtcgagccgatcacggtcgcgggctcg
gaggtcgaattcgcgacgctgcacaatcaggatgtcgtcaaggccaaaggtgtgctgatc
ggtgacaccgtggtgctgcgcaaagcgggcgacgtcattccggaaatcctgggcccggtc
gtcgatctcagggacggcagcgagcgggaattcgtgatgccggccgcctgccccgagtgc
gatacgccgctgcagcccgccaaggagggcgatgtcgatctgcggtgccccaacagccgg
tcctgcccggcgcagctgcgcgagcggattttctatctcgccgggcggaaatccctggac
atcgaaaacctcggctatgtcgccgcggccgccctcactcagccgctggaaccgaccgat
ccgccggtgaaggacgagggtgatctgttcgacctgaagatcgaacaattgctgcccatt
cggtcgtatgtactggacccggacagtggactgcccaagcgcgatccggagaccggcgag
gagaaggtcgtcaccttcttcgccacccagaagggcgaggcgaagaagaacgccctggcg
atgctggccaatatcgaggcggccaaggagcgcccgctggcccggatcatcaccggcctt
tcgatccgtcatgtcggccccgtcgccgccaccgcactggcccgtgaattccgctcgctg
gaccggatcgccgaggcgggcgaggaggagctggcggccgtggagggggtgggaccgacc
atcgccgcctcggtcaaggagtggttcgcggtcgactggcaccgcgagatcctcgagaaa
tggcggcgggccggggtccggctggaggaagagggcggcgaggacgaaggccctcgtccg
ctggagagtctcaccgtcgtcgtcaccggaacgctccagtcgtacacccgagatggggcc
aaagaggcgctgcagagccgtggtgccaaagtcaccggatcggtttcgaaaaagaccgat
ttcgtagtagtcggcgacaatccgggctccaagtacgacaaagccatgcaggtgaaggtt
cccgtgctcgatgaggacggatttggcgtcctcctcgaacaggggccggacgcggcgaga
gaggtcgcgatgacgcctccggaagagtccgcggagtag
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