Streptomyces aureoverticillatus: G3H79_10315
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Entry
G3H79_10315 CDS
T08343
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
saov
Streptomyces aureoverticillatus
Pathway
saov03030
DNA replication
saov03410
Base excision repair
saov03420
Nucleotide excision repair
saov03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3H79_10315 (ligA)
03410 Base excision repair
G3H79_10315 (ligA)
03420 Nucleotide excision repair
G3H79_10315 (ligA)
03430 Mismatch repair
G3H79_10315 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saov03032
]
G3H79_10315 (ligA)
03400 DNA repair and recombination proteins [BR:
saov03400
]
G3H79_10315 (ligA)
Enzymes [BR:
saov01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G3H79_10315 (ligA)
DNA replication proteins [BR:
saov03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G3H79_10315 (ligA)
DNA repair and recombination proteins [BR:
saov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G3H79_10315 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G3H79_10315 (ligA)
MMR (mismatch excision repair)
DNA ligase
G3H79_10315 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G3H79_10315 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
QIB43408
LinkDB
All DBs
Position
complement(2842488..2844671)
Genome browser
AA seq
727 aa
AA seq
DB search
MAVEQEGTVPAEARDEHAKLAEQIEEHRFRYYVKDQPVVSDAEFDKLLRALEALEERHPE
LRTPDSPTQKVAGSYETDFASVEHRERMLSLDNAFDDEELAAWADRVAKEVGTSDHHFLC
ELKIDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTITDIPERLQGDRIPALVEIRG
EVFFPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREG
FDIDCLSHAYELLREWGLPTTRHAKVVPGLDGVRDFITYYGENRHSVEHEIDGVVVKLDE
IPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVDIRVGVGRTGRVTPYAVVEPVTVAGSEV
EFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGGEREFVMPAECPECGT
ALRAMKEGDIDLRCPNGQSCPAQLRERLFYLAGRKCLDIENFGYVAAAALTNPLEPATPP
IVDEGDIFDLKVEELLPIKSYVLDQNSGLPKRDPKTGEEKVVFFFANQEGEPKKNTLSML
ENIAAAKERPLARILTGLSIRHVGPVAAEALAREFRSIERIEQATEEELAAVEGVGATIA
ASLKQWFAEDWHREIIRKWRAAGVRMEEEGGAEDVGPRPLEGLTVVVTGTLQNHTRDGAK
EALQSRGAKVTGSVSKKTGFVVVGDNPGSKYDKAMQVKVPVLDEAGFAVLLEQGADAARE
VALPTEE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcgaacaggaaggcacggtgcccgccgaggcacgggacgagcacgccaagctc
gccgaacagatcgaggagcaccgcttccggtactacgtgaaggaccagcccgtcgtcagc
gacgccgagttcgacaagctgctgcgcgcgctggaagccctggaggagcgccacccggag
ctgcgcaccccggactcgcctacccagaaggtcgcggggtcgtacgagacggacttcgcc
tccgtcgagcaccgcgagcgcatgctgtcgctcgacaacgccttcgacgacgaggaactg
gccgcctgggccgaccgcgtcgccaaggaagtgggcaccagcgaccaccacttcctgtgc
gagctgaagatcgacggcctcgcggtcaacctgacgtacgagaacggcaggctgacccgg
gccgcgacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtccgcacgatc
acggacatccccgagcgcctccagggcgatcgcatcccggccctcgtcgagatccgcggc
gaggtcttcttccccatggagaagttcgaggagctgaacgcccgcctggtggaggccggc
gacaagcccttcgccaacccgcgcaacgcggcagcgggttcgctgcgccagaaggacccg
cgcgtcaccgcgacgcgcccgctgcacatggtcgtgcacggcatcggcgcccgcgagggc
ttcgacatcgactgcctgtcgcacgcctacgagctgctgcgcgagtggggcctgcccacg
acccggcacgccaaggtcgtcccgggcctcgacggcgtacgcgacttcatcacgtactac
ggagagaaccgccactccgtggagcacgagatcgacggcgtcgtcgtcaagctcgacgag
atcccgctccagggccgcctcgggtccacctcgcgcgccccgcgctgggccatcgcctgg
aagtacgcgccggaggaggtcaacaccaagctcgtcgacatcagggtcggcgtcggccgc
accggccgcgtcactccgtacgccgtggtggagcccgtcaccgtagcgggctcggaggtc
gagttcgccacgctgcacaaccaggacgtggtcaaggccaagggtgtcctcatcggcgac
accgtggtcctgcgcaaggcgggcgacgtcatcccggagatcctcggccccgtcgtcgac
ctgcgcgacggcggcgagcgcgagttcgtgatgcccgccgagtgccccgagtgcggtacc
gccctgcgggccatgaaggagggcgacatcgacctccgctgcccgaacgggcagagctgc
cccgcccagttgcgcgagcgcctgttctacctcgcgggccgcaaatgcctggacatcgag
aacttcggctatgtcgccgcggccgccctcaccaaccccctggagcccgccaccccgccc
atcgtcgacgagggcgacatcttcgacctgaaggtcgaggaactcctgcccatcaagtcc
tacgtcctcgaccagaactcgggcctgcccaagcgcgacccgaagaccggcgaggaaaag
gtggtgttcttcttcgccaaccaggagggcgagcccaagaagaacaccctctccatgctg
gagaacatcgccgcggccaaggagcgcccgctcgcccgcatcctcaccggcctgtccatc
cggcacgtgggcccggtcgccgccgaggccctggctcgagagttccgctccatcgagcgc
atcgagcaggcgacggaggaggagctcgccgccgtcgagggcgtcggcgcgaccatcgcc
gcgtccctcaagcagtggttcgcggaggactggcaccgcgagatcatccgcaagtggcgt
gccgccggcgtccgtatggaggaagagggcggcgccgaggacgtggggccgcgtcccctg
gaaggcctcaccgtcgtcgtcaccggcaccctgcagaaccacacgagagatggcgcgaaa
gaggcgctgcagagccgcggagcgaaagtcaccggttccgtttcaaagaagacgggattc
gtcgtcgtgggcgacaaccccggctcgaagtacgacaaggccatgcaagtgaaggtgccc
gttctcgatgaggccggcttcgcggtcctgctcgaacaaggggcggacgccgctcgggaa
gtcgcacttccgaccgaagaatag
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