Salimicrobium sp. PL1-032A: U0355_12420
Help
Entry
U0355_12420 CDS
T10562
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sapl Salimicrobium sp. PL1-032A
Pathway
sapl03030
DNA replication
sapl03410
Base excision repair
sapl03420
Nucleotide excision repair
sapl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sapl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U0355_12420 (ligA)
03410 Base excision repair
U0355_12420 (ligA)
03420 Nucleotide excision repair
U0355_12420 (ligA)
03430 Mismatch repair
U0355_12420 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sapl03032
]
U0355_12420 (ligA)
03400 DNA repair and recombination proteins [BR:
sapl03400
]
U0355_12420 (ligA)
Enzymes [BR:
sapl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U0355_12420 (ligA)
DNA replication proteins [BR:
sapl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U0355_12420 (ligA)
DNA repair and recombination proteins [BR:
sapl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U0355_12420 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U0355_12420 (ligA)
MMR (mismatch excision repair)
DNA ligase
U0355_12420 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U0355_12420 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
HHH_8
RNA_pol_A_CTD
5_3_exonuc
Zn_ribbon_NUD
zf-IS66
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WVR01497
LinkDB
All DBs
Position
complement(2404966..2406969)
Genome browser
AA seq
667 aa
AA seq
DB search
MDKEQAKKRHDELKRQLEKYSYEYYVLDAPTVPDAEYDERLRELMTIESEHPELVTPDSP
TQRVGAEPLDQFEKVRHEIPMLSLGNAFNEQELRDFDRRVQQGADGDISYVCELKIDGLA
VSLLYEDGILVRGATRGDGTVGEEITGNLRTIRSIPLRLTHPETIEVRGEAYMPKKSFDA
LNKEKDNNGEAPFANPRNAAAGSLRQLDPKIAASRNLDIFLYGVGLWEEETVESHSGRLE
YLEQLGLKTNPEWRRLKDIEAVIDYVKGWVDHRNDLDYEIDGIVVKVDQLDQQETLGFTA
KSPRWATAYKFPAEEVITKLRDIHLTVGRTGVVTPTAILDPVRVAGTTVQRASLHNEDLI
RDRDIRIGDTVVIKKAGDIIPEVLRVVEEERTGEEEPFSMPKTCPECGSDLVRLEEEVAL
RCINPNCRAQLREALIHFVSRNAMDIEGLGEKVIAQLFDEELIHNIADLYKLERQELLQL
DRMGEKSVSNLLEAIEQSKGNSMEKLLFGLGVRYVGTKAARTLSEHFGDMDHLQKATVGD
LEAIPEIGEKMADSIHRYFQREEVTALLTELSELGLNMEYKGMKKSEQASDSLFSGKTVV
LTGKMEIYSRSEAKKYVEALGGKVTGSVSKNTDLLIAGAEAGSKYTKAETLGVEIWNEQQ
FAEALQE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
ttggataaagaacaggcgaaaaagcgtcatgatgagttgaagcgacagcttgagaaatac
agctatgaatactacgtgctcgatgctcccaccgtacctgatgcggagtatgatgagaga
ttgagggaattgatgacgatcgagtcggagcatccggagcttgtgacaccggactccccg
acgcagcgtgtcggagctgagccgctcgatcagttcgagaaagtccggcacgaaatcccg
atgctcagtctcggcaatgccttcaatgaacaggaactgcgggatttcgaccgccgggta
cagcaaggtgcggacggggacatttcgtacgtatgcgaactgaaaatagacggactcgct
gtatctcttctgtatgaagacggtattctcgtccggggcgcgacccgcggggacgggacg
gtcggagaagagataacggggaacctccgcacgatccgcagcatcccgctccggttgact
catccggagacgatcgaagtacggggcgaagcgtatatgccgaagaaatccttcgacgca
ctcaataaagagaaggataacaacggagaagctccgttcgccaatccgcggaacgcagcg
gccggatccctgcgtcagctcgatccgaaaatcgccgccagccgtaacctcgacatcttc
ctttacggtgtgggtctttgggaagaggagactgtggagagtcatagcgggcgtctggag
tacctggagcagctcggactcaaaacgaacccggaatggcgccgcctgaaggatatcgag
gcagtgatcgactacgtgaaagggtgggtggaccaccggaacgacctcgactatgaaatc
gacggtatcgtcgtcaaagtcgatcagctggaccagcaggagacgctcggcttcaccgcg
aaaagcccgcgctgggcgacggcgtacaaatttccggcagaagaagtgattacgaaactc
cgcgacatccatcttaccgtcggacgaacaggagtcgttacaccgacggccatcctcgat
ccggtccgtgtagcgggaacgaccgtacagcgggcttcgctccacaatgaagacctgatc
agggatcgcgatatccgcatcggggatacggtcgtcatcaaaaaagccggagacatcatc
ccggaggtgctgcgcgttgtggaggaggaacgtaccggagaggaggagccgttctccatg
ccgaagacgtgcccggaatgcggcagtgacctcgtccggctcgaagaggaagtggcgctt
cgctgcatcaatccgaactgccgggctcagctgagagaggcgttgatccatttcgtctca
agaaacgccatggatatcgaaggactcggggagaaagtgattgcgcagctgtttgatgaa
gagttgatccataacatcgccgatttgtataagcttgaaagacaggagctgctgcagctc
gaccggatgggagagaaatcggtgagcaacctgctcgaagcgatcgaacagtcgaaaggg
aactcgatggagaagcttctgttcggacttggtgtgcgttatgtcgggacgaaagcggcc
aggacgctctccgaacatttcggtgacatggaccacctgcagaaagcgacggtcggtgat
ctcgaagccatccctgaaatcggagagaagatggccgattcgatccaccggtatttccag
agggaggaagtgacggcgctgcttacggagctttcagaactcggtctcaacatggagtat
aagggaatgaagaaatccgaacaggcctccgattcccttttctcagggaaaacggtcgtc
cttaccgggaagatggagatttattcgcgctcggaagccaagaagtacgtagaagctctc
ggcggtaaagtgaccgggagcgtcagcaagaatacggatctgttgatcgccggagcggaa
gccggatcgaagtatacgaaagctgaaacactgggtgttgagatatggaatgaacaacag
tttgcggaagccttacaggagtag
DBGET
integrated database retrieval system
