Scrofimicrobium appendicitidis: SAC06_07760
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Entry
SAC06_07760 CDS
T10714
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sapp Scrofimicrobium appendicitidis
Pathway
sapp03030
DNA replication
sapp03410
Base excision repair
sapp03420
Nucleotide excision repair
sapp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sapp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAC06_07760 (ligA)
03410 Base excision repair
SAC06_07760 (ligA)
03420 Nucleotide excision repair
SAC06_07760 (ligA)
03430 Mismatch repair
SAC06_07760 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sapp03032
]
SAC06_07760 (ligA)
03400 DNA repair and recombination proteins [BR:
sapp03400
]
SAC06_07760 (ligA)
Enzymes [BR:
sapp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAC06_07760 (ligA)
DNA replication proteins [BR:
sapp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAC06_07760 (ligA)
DNA repair and recombination proteins [BR:
sapp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAC06_07760 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAC06_07760 (ligA)
MMR (mismatch excision repair)
DNA ligase
SAC06_07760 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAC06_07760 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
PI-PLC-C1
Motif
Other DBs
NCBI-ProteinID:
XBW07532
UniProt:
A0AAU7V6U8
LinkDB
All DBs
Position
complement(1688623..1690959)
Genome browser
AA seq
778 aa
AA seq
DB search
MSETVVPPEAAARWRDLADLIEEARHRYYDLDQPTLADAEYDAAFRELTELEAQYPQLAS
QDSPTATVGGAAQSTFDPVVHREQMYSLEDVFSLDEVAAWQRKMADNWPGEDLAFTAEVK
IDGLAVSLTYQNGRLIQAATRGDGKVGEDVTANVRTISSVPARLQGSGWPELVEVRGEVF
FLLKDFESVNDQRLAQDERPFVNPRNAAAGSLRQKDPAVTASRPLSMFAHGIGYVEPGPG
FVAPTTQEGWYQQLRNWGLPTSPYTQVVHTVDQTRALIERVGSERAQIEHEIDGIVLKLN
DLDQQRELGFTSRTPRWAVAYKYPPQEVFTRLLDIQVQVGRTGRVTPFAIFEKVLVAGSH
LQHATLHNEEMVRRKGILIGDKVIVRKAGDVIPEVVGPVLEDRDGTERPFVMPTRCPSCG
TELAPAKEGDIDLRCPNAGGCPAQITERLAHLGSRGALDVEGLGDEAALALTQPEAGRDE
VIAALATGATLTLEDGTVLSLAQPELIPHGERFDRAAQLLPPPTGPVLTSEKDVFDLRVE
DLADVLVWRPVNVKGVPTGDWRQVRYFWSQPWRKQGKKFVPVQSVPRKNTVTMLEQLEAA
KTKELWRLLVALSIRHVGPTAAQALAQHLPSLDRIEAATREELAQVEGVGQVIAESLEGW
FAVDWHREIIDAWRASGVRFADQQVEELPQVLAGLTVVVSGAMPGFDREEAKEAIVARGG
KAASSVSKRTAVVVAGPGAGSKVAKAEALGVPVLTEEHFADLLARGQVAIEEARANQS
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaactgtggtgcccccagaggcggcggctcgttggcgtgacctggccgaccta
attgaggaagctcggcatcggtactacgacctggaccagcccactttggccgatgctgag
tacgacgcagcctttcgggaactgacggaactggaggcccagtacccgcagttggcctca
caggattccccgaccgccaccgtgggcggggccgcacaaagcacgttcgacccggtggtg
caccgggagcagatgtactcgctcgaagacgtcttctccttggacgaggtggccgcctgg
cagcggaaaatggcggacaattggcccggggaggacctggctttcaccgcggaagtgaag
atcgacggattggcggtcagtctgacctaccaaaacggtcgcctgatccaggctgccacc
cgcggggacggaaaagtgggggaggatgtcactgctaacgttcgcaccatctcctcagtt
ccggcccgcctgcagggcagcggctggccggaactggtggaggttcgcggcgaggtcttc
ttcctgctgaaggacttcgaatcggtcaacgaccagcggttggctcaggatgagcgcccg
ttcgtgaaccctcggaatgcggctgccggctcgctgcggcagaaggatccggcggtgacc
gcctcgcggccgctgtcgatgtttgcccacggaatcggctatgtggagccgggcccgggt
ttcgttgcgcccaccacccaggagggttggtatcagcagcttcgcaattggggcctgccg
acctctccctacacccaggtcgtgcacacggttgaccagacccgggcgctgattgagcgg
gttggcagtgagcgggcccagattgaacatgagatcgacgggatcgtcctcaagctaaac
gacctggatcagcagcgggagctgggtttcacctcgcgcaccccgcggtgggcggtggcc
tacaagtacccgccgcaggaagtgttcacccgactgttagacattcaggtgcaggtcggc
cggaccgggcgggtcacgccgtttgccatcttcgagaaggtcctggtggccggctctcac
ctgcagcacgccactttgcacaatgaagagatggtccggcgcaaaggcatcctgattggg
gacaaggtgatcgtccggaaggcgggcgacgtgatccccgaggtggtgggaccggtgctg
gaggatcgggacgggaccgaacgcccctttgtgatgccgacccggtgtccctcctgcggg
acggagctggcaccggcgaaagagggggacatcgacctgcgctgtccgaacgcgggtggc
tgtcccgcccagattaccgaacgcttggcgcacctcggatcgcgcggagcactagacgtg
gaaggacttggggacgaggcggcgttggccctgacccaaccggaagccggccgggacgag
gtgatcgccgccctggccaccggcgccaccctgaccctggaggacgggacggtgctgtcg
ctggcccagccggaactaattcctcacggggaacggtttgaccgggccgcccagctcctt
cccccgccaaccgggccggtgctcacttccgagaaagacgtgtttgacctgcgggtggag
gacctggctgacgtcctggtttggcgaccggtaaacgtgaagggtgtgcccaccggtgac
tggcgccaggtacgctacttctggtcccaaccctggcgcaaacaggggaaaaagttcgtt
ccggtgcagtcggttccgcgcaaaaacaccgtgacgatgctggagcagctggaagccgcc
aagacgaaggaactgtggcgcctactggtggccctttcgattcgtcacgtcggcccgacc
gcagcccaagccctggcccagcatctgcccagtctggaccggatcgaggcggccacacgg
gaggaactggcccaggtggagggggttggtcaggtgatcgccgagtcgctggaaggttgg
tttgctgtcgactggcaccgagagatcatcgacgcctggcgtgcctccggggtcaggttc
gccgaccagcaggtagaggaacttccccaggtgctggcgggcctaacggtggttgtctcc
ggcgccatgcccgggtttgaccgggaggaagcgaaagaggcgattgtggctcgcgggggg
aaggccgcgtcgtccgtctccaaacggaccgccgtggtggtggccggacccggggccgga
tcaaaggtggctaaggccgaagccctcggagtcccggtcctgactgaggagcacttcgca
gacctgctggcccggggccaggtggccatcgaagaggcgcgcgccaaccagtcctaa
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