Salinispora arenicola: Sare_1109
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Entry
Sare_1109 CDS
T00613
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
saq
Salinispora arenicola
Pathway
saq03030
DNA replication
saq03410
Base excision repair
saq03420
Nucleotide excision repair
saq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sare_1109
03410 Base excision repair
Sare_1109
03420 Nucleotide excision repair
Sare_1109
03430 Mismatch repair
Sare_1109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saq03032
]
Sare_1109
03400 DNA repair and recombination proteins [BR:
saq03400
]
Sare_1109
Enzymes [BR:
saq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sare_1109
DNA replication proteins [BR:
saq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sare_1109
DNA repair and recombination proteins [BR:
saq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sare_1109
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sare_1109
MMR (mismatch excision repair)
DNA ligase
Sare_1109
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sare_1109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH_8
HHH
BRCT_2
DUF5818
Motif
Other DBs
NCBI-ProteinID:
ABV97017
UniProt:
A8M5E3
LinkDB
All DBs
Position
1247895..1250027
Genome browser
AA seq
710 aa
AA seq
DB search
MPEDAIGQQVPPEQEAAGAEPTSAARERHATLSLELTEHQYRYYVLDAPTISDAEFDERL
RELAALEAEFPALRTPDSPTQRVGGAFSTDFTPVAHAERMMSLDNAFTDEELDAWAERVE
RDAGGPVPYLCELKVDGLAINLTYERGRLVRAATRGDGRTGEDVTANVRSIRDVPAELAP
SAEFPEIPGLLEVRGEIYFPIAGFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITAS
RPLRLVVHGIGARQGWQPSTQSESYAALRAWGLPTSDRWRVVPDLAGVAEYIAHYATHRH
DVEHEIDGVVVKVDPVSIQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIDVNVGRTGRVT
PFAVLEPVRVAGSTVALATLHNAREVRRKGVLIGDTVVIRKAGDVIPEVLGPVVELRPPD
ARSFVMPSTCPCCGTPLAPAKEGDVDIRCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYK
GAAALLDAQIITDEGDLFALDAAQLTRSPFFVNKDGSLGSNAVKLLDNLTVAKERELWRV
LVALSIRHVGPTAAQALARHFRSIEAIDQAGEEELSAVDGVGPTIAASVREWFAVAWHRE
VVRKWAEAGVRMTEEAVDEGPRPLEGMTVVVTGTLAGFSRDQAAEAIQSRGGKVTGSVSK
KTAFVVVGENPGTKADKAASLKVPVLDEEGFRVLLDAGPDAAREVARVED
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaggatgccatcggccagcaggtcccgccggagcaggaggcggccggcgcggag
ccgacctccgcggcgcgcgagcggcacgccacgctcagcctggagctgaccgagcaccag
tatcgctactacgttctcgacgcaccgaccatctccgacgcggagttcgacgagcggctg
cgggaactggcggcactggaggcggagtttcccgctctacgcacccccgactcaccgacg
cagcgggtgggcggcgccttctccaccgatttcactccggtggcgcacgccgagcggatg
atgtcgctcgacaacgccttcaccgatgaggaactggacgcctgggccgagcgggtcgag
cgggacgctggtggcccggttccctacctgtgtgaactgaaggtggatggcctcgcgatc
aacctgacttacgagcgggggcgcctggtgcgggccgccacccggggtgatggccgcacc
ggcgaggacgtgacggcgaacgtgcgcagcatccgggacgtgccggcggagctggcaccg
tcggccgagttcccggagatcccagggcttctggaggtccgtggcgagatctacttcccg
atcgccggattcgcggacctgaatgcggggctggtcgagcagggcaaggcccccttcgcc
aacccgcgtaacgcggctgccggcagtctccggcagaaggatccgcggatcaccgcgtcc
cgcccgctgcgattggtcgtgcacggcatcggggcccggcaggggtggcagccgagcacc
cagtccgagtcgtacgcggcgctgcgggcctggggcctgccgaccagcgaccgatggcgg
gtcgtgccggacctggccggcgtggcggagtacatcgcgcactacgccacccaccggcac
gacgtcgagcacgagatcgatggtgtggtggtgaaggtcgacccggtctcgatccagggc
cgactggggtcgacgagccgggcgccgcgctgggcgatcgccttcaagtacccgcccgag
gaggtcaacacccggctgctcgacatcgacgtgaatgtcggccgtaccggccgggtcact
ccgttcgctgtcctggagccggtgcgggtggccggatcgacggtggcgctggccaccctg
cacaacgcccgcgaggtaaggcgcaagggtgtgctgatcggcgacacggtggtgatccgt
aaggccggtgatgtgatccccgaggtgctcggtccggtggtggagctgcgcccgccggac
gcccggtcgttcgtgatgcccagcacgtgcccgtgctgcggcaccccgctggccccggcg
aaggagggcgacgtcgacatccgctgccccaacacccgcagctgtccggcccagctccgg
gagcgggtcttccacctcgccggacggggagccttcgacatcgaggttctcggttacaag
ggagctgcggcactcctcgacgcccagatcatcacggatgagggagatctgttcgccctc
gacgcggcgcagctgacgcgctctccgttcttcgtcaacaaggacggcagcctcggcagc
aacgcggtcaagctgttggacaacctgaccgtggccaaggagcgcgagctgtggcgggtg
ctggtggcgctctccatccggcacgtgggcccgaccgcggcgcaggcccttgcccggcac
ttccggtcgatcgaggcgatcgaccaggccggggaggaggaactgtcggctgtcgacggg
gtcgggccgaccatcgccgcgagtgtccgggagtggttcgctgtcgcctggcaccgggag
gtggtgcgcaagtgggccgaggcgggggtgcggatgacggaggaggcggtggacgagggg
ccgcgcccgctggaggggatgaccgtggtggtgaccggaacgctcgccggcttctcgcgg
gaccaggcggccgaggcgatccagtcgcggggaggcaaggtcaccggctcggtctcgaag
aagaccgcgttcgtcgtggtcggtgagaaccctgggacgaaggcggacaaggcggcgagc
ctgaaggtgccggtgctggacgaggagggcttccgggtgctgctcgacgcgggtccggac
gcggcccgcgaggtggcccgggtcgaggactga
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