Schlegelella aquatica: OMP39_08030
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Entry
OMP39_08030 CDS
T08587
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
saqa
Schlegelella aquatica
Pathway
saqa03030
DNA replication
saqa03410
Base excision repair
saqa03420
Nucleotide excision repair
saqa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OMP39_08030 (ligA)
03410 Base excision repair
OMP39_08030 (ligA)
03420 Nucleotide excision repair
OMP39_08030 (ligA)
03430 Mismatch repair
OMP39_08030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saqa03032
]
OMP39_08030 (ligA)
03400 DNA repair and recombination proteins [BR:
saqa03400
]
OMP39_08030 (ligA)
Enzymes [BR:
saqa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OMP39_08030 (ligA)
DNA replication proteins [BR:
saqa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OMP39_08030 (ligA)
DNA repair and recombination proteins [BR:
saqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OMP39_08030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OMP39_08030 (ligA)
MMR (mismatch excision repair)
DNA ligase
OMP39_08030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OMP39_08030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UZD53652
LinkDB
All DBs
Position
complement(1772864..1774972)
Genome browser
AA seq
702 aa
AA seq
DB search
MTPDLFAHEPRGGEGPRAEAPPAERAAWLREQLQRYDYHYYVLDAPLVPDAEYDRLFREL
QALEHAHPELQTPDSPTQRVGGGLLDELPKVRHRVPMLSIQTETDTTPAGAFAFDARIRK
RLGLGPDDPPVEYAAELKFDGLAISLRYEEGVLVRAVTRGNGEEGEDVTANVRTIRQIPL
RLQGVVPPVLEARGEIYMRRDDFERLNQRRREAGEATFINPRNTAAGAVRQLDPKVTAAR
PLSFFAYGIGEVQGWRGEPSTHGALLDALAHFGLPVSRERAVVRGGEGLAEFHARIAAKR
DQLPFDIDGVVYKVNSLALQRELGFRNREPVWAVAHKYPAQEQMTLLRDIEVQVGRTGKL
TPVAKLAPVFVGGVTVTNATLHNQDEIRRKDVRIGDTVIVRRAGDVIPEVVSVVLERRPP
EVAASEPWDLYARLQGRCPVCGSDIVREEGEVDWRCTGGLFCAAQRKQALLHFAQRRAMD
IEGLGEKLVDQLVDGGLVRTLPDLYKLGVAKLAQLDRMADKSAQNLVQALEKSKRTTLSR
FLFGLGIRHVGEATAKDLARHFGRLDRIMDASVEELLEVPEVGPVVAQSIRTFFDQPHNR
EVVEQLRAAGITWEEGEAGRGHEAQPLAGLTFVLTGTLPALTREEAKAMIEAAGGKVAGS
VSKKTSYVVAGEEAGSKLSKAQELGVPVLDEAGLRALLNQGA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccgatctgttcgctcacgagccgcggggcggcgaggggccccgcgccgaggcg
ccgccggccgagcgcgcggcttggctgcgcgagcagctgcagcgctacgactaccactac
tacgtgctcgacgcgccgctcgtgccggatgccgagtacgaccggctgtttcgcgagttg
caggcgctggagcacgcgcatcccgagctgcagacgcccgattcgcccacgcagcgtgtg
ggcggcggcctgctcgacgagctgcccaaggtgcgtcatcgagtgccgatgctgtcgatc
cagacggagaccgacaccacaccggccggcgcattcgccttcgacgcgcgcatccgcaag
cgcctgggcctgggccccgacgacccgcccgtcgagtacgccgccgagctcaagttcgac
gggttggcgatcagcctgcgttacgaggagggggtgctggtgcgcgccgtgacgcgcggc
aatggcgaggaaggcgaggacgtgaccgccaacgtgcgcacgatccgtcagatcccgctg
cgcctgcagggcgtcgtgccccccgtgctggaggcgcgcggcgagatctacatgcgccgc
gacgacttcgagcgcttgaaccaacgacgccgcgaggcgggcgaagccaccttcatcaac
cctcgcaacaccgcggcgggcgccgtgcggcagctcgaccccaaggtgacggccgctcgg
ccgctgtccttcttcgcctacggtatcggcgaggtgcagggctggcgcggcgagccgtcc
acgcacggcgcgctgctggacgcgctggcgcacttcgggctgccggtcagccgcgagcgc
gccgtggtgcgaggcggcgagggcttggcggagttccacgcccgcatcgccgccaagcgc
gatcagctgcccttcgacatcgacggcgtggtctacaaggtcaacagcctggccttgcag
cgcgaactgggctttcgcaaccgtgaaccggtgtgggcggtcgcgcacaaatacccggcc
caggagcagatgacgctgctgcgcgacatcgaggtgcaggtaggccgaaccggcaagctg
acgcccgtggccaagctggctcccgtgttcgtcggcggcgtgacagtgaccaacgccacc
ttgcacaaccaggacgagatccgccgcaaggacgtgcgtatcggcgacacggtgatcgtg
cggcgggctggcgacgtcattcccgaggtggtgtcggtcgtgctcgagcgccggcccccg
gaggtggccgccagcgagccgtgggacctctatgcgcggctgcaaggccgctgtccggtg
tgcggctcggacatcgtgcgcgaggaaggcgaggtggactggcgctgcacgggcgggctg
ttctgcgccgcgcagcgcaaacaagcgctgctgcacttcgcccagcggcgcgcgatggac
atcgaagggctgggcgaaaagctcgtggaccaactcgtcgatggcggcctcgtgcgcacg
ctgccggacctctacaagctcggtgtggccaagctcgcccaactcgaccgcatggccgac
aagtccgcgcagaacctcgtgcaggcgctggagaagtccaagcgcacgacgctgtcgcgc
tttctgttcgggctgggcatccggcatgtcggcgaggcgacggcgaaggacctcgcgcgt
cacttcggccgcctggatcgcatcatggacgccagcgtcgaagagttgctggaggtgccc
gaggtggggcccgtcgtcgcacagagcatccgcactttcttcgaccagcctcacaaccgc
gaagtggtggagcagttgcgcgcggccggcatcacatgggaggaaggcgaggcagggcgg
ggccacgaagcgcaaccgctggccggcctgaccttcgtgctcaccggcacgctgccggcc
ctcacccgcgaggaagccaaggcgatgatcgaggcggccggcggcaaggtggccggctcg
gtgtcgaagaagacgagctacgtcgtcgccggcgaagaggcaggcagcaagctcagcaag
gcccaggaactcggcgtgccggtgctcgacgaggcaggcttgcgggccttgttgaaccag
ggggcgtga
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