Sorex araneus (European shrew): 101543986
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Entry
101543986 CDS
T07854
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
sara
Sorex araneus (European shrew)
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sara03036
]
101543986 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
sara03400
]
101543986 (SMCHD1)
Chromosome and associated proteins [BR:
sara03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101543986 (SMCHD1)
DNA repair and recombination proteins [BR:
sara03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101543986 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
101543986
NCBI-ProteinID:
XP_004606169
LinkDB
All DBs
Position
Unknown
AA seq
2179 aa
AA seq
DB search
MGPPRGALDASPQSPGAGRHNVSGLGSDVGSTPTPALFSRPKQKRARLNGGRPASRRPRS
PREHPRVRREPCCRLGRAPQPGIPAVGETARVLRAPLSGLLCGEKSGLSPRCLRWRESRR
SLDVVEFLGAICIGFWKRCVHFWGFRSSLALPASVGSRGAADPRKLPRRARRAGRCPACS
LSPDPWQPQSLAVPRGSTGIAGGTSKGVSVPLLLVCFENERPPQRSTLKREVFCRDVMTL
GISSEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDTL
VKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRQIQIKLLFDETQGKPAVAVID
NGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAVF
FVGQSARMISKPADSQDVHELMLSKEDFEKKEKKKEAIYSGYIRNRKPSDSVHITNDDER
FLHHLISEEKEKESFTAVIITGVQPGHILYLKNYFHLWTRQLAHIYHYYIHGPKGNEKRT
SQEAGPFNNIDIEISMFEKGKTPKIVNLRQIQDDMQTLYINTASDNFEFKAHVEGDGVVE
GIIRYHPFLYDRETYPDDPCFPSKLKDEDDDEDFFILDKAARGKRPIFECFWNGRLIPYT
SVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTR
ILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIEW
DGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKTV
PIAKLDRTVAEKTVKKYVEDEMARLPDRLSVTWPEGDELLPNETRPAGTPIGALRIEILN
KKGETMQKLPGTSHGGSKKLLVELKVILHSPNGNKEIISHISQHGGKWPYWFKKMENIQK
LGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDSPFRVGVPFNIP
LEFQDEFGHTSQLVNDIQPILEASGLSLHYEEITKGPNCMIRGVTAKGPVNSCQGKNFNL
KVTLPGLKEDSQILKIKLLPGLPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNVTSQP
KLIVHCKFSGAPNLPVYIVDCSSSGTNILSGSAIQVQNIKKDQMLKAKIEIPSCKNVAPV
EKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEINWIAGDVMRNLIFQMYDEGEREIHIT
SALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSIKDMRYCQVSFQDDHVSLESAFTVRPL
PDEPKHLKCELKGGKTVRMGQELEGEIAIIVTDQYGNQIQAFSQSSLSALTIAGVGLDSS
YLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGLPSKLLLVDWPE
VKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLTKDSCLKLTPSNQQHKTDEKGR
ANLGVFSVYAPRGEHTMQVKAIYNKITIDGPKIKLMILPDPEKPIRINVKFDKDASFLAG
GVFTDFIITVISEDESTIKNINPTRIFMKLWKLSNSGSRPPPNAETFSCNKIKEDKEDGC
FYFRDKAIPNKVGTYCIQFSFMMDKANILNSEQVIVDVLPNQPVKLVPEIQPATPAVSNV
RSVASRTLVRDLHLNITDDYNNRTGMNLVGTIIATIRGSNAEDTDTPLFIGKVRTLEFPF
VKGSAEITSLVLSENSPGKDSTEYFIVFEPQLPALSRTLESYILPFMFYNDVKKQQQMAA
LTKEKDQLSKSIIMYRSLFEASKQLVDEMKCQVEEAKLKEAQLRGELKTHNIDIPTAQQV
PHIEALLKRKLSEQEELKKRPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAVVISWHL
ASDMDCVVTLTTDAARRIYNETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLHFKPIG
DPVFARNLLTFPDNVEHCETVFGMLLGDTILLDNLDAANHYRKEVVKITHCPTLLTRDGD
RIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLVLGDQIELLRQYRTAVCRLGTVNKD
LNGQLEYLHTPDMKKKKQELDEQEKSLKLIEQKLGMTPTNKCNETRHQTKVEMTECLIPP
KRMRRESTRQSRIITKADV
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atgggccctccccggggagctctggacgccagcccgcagtccccgggcgcagggcgccat
aacgtctcggggctcggttcagacgtcggcagcacccccacccccgctttgttttcacga
cccaaacagaaacgcgcgcgactgaacggggggcgcccggcctcccgccgcccgcggtct
ccccgcgagcacccacgtgttcgcagagagccctgctgccgcctgggccgggcaccccag
ccgggcatcccggcagtcggggaaaccgcccgggtcctgcgggcgccgctctcgggactt
ctctgtggagaaaagagcgggctcagcccccggtgcctccggtggcgcgagtcgcgccgg
tcgttggacgtggtggaattcctgggggcgatttgcattgggttctggaaacgttgcgtt
catttctggggctttcggtcaagtttggcgctgcccgcctcggtggggtcccgcggggct
gcggacccccgcaaactgccccgccgcgcgcggcgggcggggcgctgcccagcttgttcg
ctgagccccgatccttggcagccccagagcttggccgtaccaagggggtccacgggtata
gcgggggggacatcgaagggggtttctgtcccactcttgttagtttgctttgaaaacgaa
cgaccgccgcagagatcaactttgaagcgggaagtgttttgtagagacgtgatgacactt
ggcatttcatcagaagagaaatttgttattacaacaaccagtagaaaagaaattacctgt
gataattttgatgaaactgttaaggatggagtcactttatacctgctgcagtcagtcaac
cagttgctactcacggctacaaaagagcgaattgacttcctacctcactatgacactctg
gttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaaccctttgccctttgct
cttgcagaattaattgacaattcattgtctgctacttctcgcaacaccggtattagacaa
atacagattaaactgctttttgatgaaacgcaaggaaaacctgccgttgcagtgattgat
aacggtagaggaatgacctctaaacaacttaataactgggctgtgtacaggttgtcaaaa
ttcacaaggcaaggtgactttgaaagtgatcattcaggatatgtccgtccagtaccagtc
ccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggcagtgttc
tttgttggacaatcagctagaatgataagcaaacctgcagattcccaggatgttcatgag
cttatgctttctaaagaagattttgagaagaaggagaaaaaaaaagaggcaatatacagt
ggatatattaggaacagaaagccttctgattctgttcacattacaaatgatgatgagaga
tttctgcatcatcttatctcagaggagaaggaaaaggagagctttactgctgtgatcatc
acaggggtacagccaggtcacatactgtacctgaaaaattatttccatctttggacaaga
cagttagcgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacggaca
tcccaagaagctggacctttcaacaatattgacattgaaatttctatgtttgaaaaggga
aagacacctaaaattgtcaacttaaggcaaatacaagatgacatgcagacactgtatata
aacacagcatctgataattttgagttcaaggctcatgttgaaggagatggtgtagtagaa
ggaattattcgatatcacccatttttatatgatagagaaacatatcctgatgatccatgc
tttccatcaaaactaaaggatgaagatgatgatgaggattttttcatactcgataaagca
gcaagaggtaaaaggcctatttttgaatgtttttggaatggacgactgataccatataca
tctgttgaagactttgactggtgtacacctcctaagaagagagggcttgcacccattgaa
tgctataatagaatatccggcgcattattcactaatgacaaattccaggtcagcacaaat
aaactgactttcatggatcttgaactgaagttgaaagataagaacaccctttttacacgg
attttaaatggacaggaacagcgaatgaaaattgacagagaatttgctttatggctaaag
gattgccatgaaaaatacgacaaacaaataaaatttacactttttaaaggaataattaca
cgtcccgatctaccttctaaaaaacaaggtccctgggcaacgtactctgcaatagaatgg
gatggaaaaatatacaaagcaggacaactggtcaagacaatcaagacacttcctctcttt
tatgggagcatcgtgaaattttttctttacggtgaccatgatggagaagtatatgctaca
ggaggagaagttcaaattgcaatggagcctcaggcactatatgatgaaataaaaactgtt
ccaattgcaaagctggatagaacagttgctgagaaaactgtgaaaaaatacgtagaagat
gaaatggcaaggctccctgatagattgtctgtaacttggcctgagggagatgaattactg
ccaaatgaaacaagacctgctggaacccctattggtgcattaagaattgaaatactgaat
aaaaagggggaaacaatgcaaaagcttccaggaacaagtcatggaggatcaaagaaactc
cttgttgagcttaaagttatattacactctccaaatggaaataaagaaataatctcacat
attagtcagcatggaggaaaatggccatactggtttaaaaaaatggaaaatattcaaaaa
ttggggaactatacattgaaattacaagttgtattgaatgaaagtaatgcagacacttat
gcaggaagaccattaccttctaaagcaattaagttttctgttaaagagggtaagccagag
aaattttcatttggtcttctggattctccttttcgtgttggagtcccattcaatatccct
ctggagtttcaggatgaatttggtcatactagtcaactagtaaatgatattcagccaatt
cttgaagcaagtggtctatctttacattatgaagagataaccaaaggaccaaattgtatg
attcgaggtgttacagctaaaggccctgtaaactcctgtcaaggcaagaattttaatctg
aaggttactctgcctggattaaaagaagactcgcagattttgaaaattaagttgttacca
ggtctccctcatcgactaaaagtgaaacctgattctgaaattttagttatagaaaatgga
accgctttcccatttcaggttgaagtgttggatgaatcagacaatgtaacatcacaacca
aaactgattgttcattgtaagttttcaggtgctcctaacctgcccgtctacattgtggat
tgcagtagttctggaaccaatattttatcaggatctgcaattcaggttcagaatattaag
aaagatcagatgcttaaagcaaaaatcgaaatacctagttgtaaaaatgtggcacctgtt
gaaaagactattaaattgcttcctagtagccatgttgcaagactgcaaatattcagtgtg
gaagggcagaaggctattcaaatcaaacaccaggatgagattaattggatagcaggtgat
gttatgcgtaatcttatttttcaaatgtatgatgaaggagaaagagaaatccatataaca
tcagctttggcagagaaaattaaggttaattggactcctgagattaacaaagaacacttg
ctacagggtctgcttcctgatgtccaggtcccaacatccatcaaggatatgcgctactgc
caggtttcattccaagatgaccatgtgtctttggaaagtgcatttacagtaagaccactt
cctgatgaacctaaacatctaaagtgtgagttaaaaggtggaaaaacagtacggatgggt
caagagcttgaaggtgaaattgctataatagttaccgatcagtatgggaatcagattcaa
gcattttcacagagttctttgtctgccttgacgatagctggggttggacttgatagctca
tatttgaaaactacttttcaggaaaacacacaaagtataagtgtcagaggcatcaaattt
attccaggtcctcctggaaataaggatctttgttttacttggcgtgagttttctgacttt
attcgagtgcagctaatttcgggactaccctctaaacttctccttgtggactggccagaa
gtcaaggagtctattccagttattaatggaagagaactacagaatcctctcattgttcaa
ctttgtgatcagtgggataacccagcacctgtacctcaggttaaaataagcctcacaaaa
gatagctgtttaaagcttactccttcaaatcaacagcataaaacagatgaaaagggcagg
gctaatttgggagtattcagtgtttatgcccctagaggagaacatacaatgcaggtgaaa
gccatctataacaagattaccatagatggaccaaaaattaagttaatgattcttccagat
cctgaaaaacctatccgtatcaatgtgaaatttgataaagatgcttcctttttagcagga
ggtgttttcactgattttataattactgtcatttccgaagatgaaagcaccattaagaat
attaatcccacacgtattttcatgaaattgtggaagctatctaatagtggaagccgacct
ccaccaaatgcagaaacgtttagttgtaataaaataaaagaagacaaggaagatggttgc
ttttacttcagggataaagcaattcctaacaaagtgggaacctattgtatccagtttagt
tttatgatggataaagccaatattcttaacagtgaacaggttatagttgatgttctccct
aatcagcctgtgaagttagttcctgaaatccaaccggctacaccagctgtttcaaatgtt
cgctctgttgccagcagaaccttggtccgagatttgcaccttaacatcacggatgactac
aataatcgaactggaatgaatttggttggcaccatcatagctaccatcaggggttctaac
gcagaagatactgacacaccactcttcattggcaaagttaggacactcgaatttcccttt
gtgaaaggttcagcagaaatcacgagtctagtgctatcagagaacagtcccgggaaagat
agtactgagtatttcattgtatttgagccacaactaccagctttatcaagaacattagaa
tcatatatactaccatttatgttttacaatgatgttaagaaacagcagcaaatggcagca
cttactaaagagaaggaccaattatctaagtcaattattatgtatagaagtttatttgaa
gccagcaaacagcttgttgatgaaatgaaatgccaagttgaagaagcaaaattgaaagag
gctcagttgcggggtgaattaaaaacacataatattgacattcctacagcacagcaggtg
ccacacattgaagcacttttgaagagaaaactgtcagagcaggaagaactaaagaagaga
cctagaagatcatgcactctcccaaactatactaaaggcagtggagatgttttgggaaag
attgcacaccttgcacaaattgaggatgatagagctgcagtggtcatttcttggcatcta
gcaagtgacatggactgcgtggtcaccctgaccaccgacgccgcacgccgcatctacaat
gagacccagggtcgccagcaggtgctgccccttgattctatctataagaagactcttcca
gattggaaaagaccactacctcattatcgaaatggaaaattacattttaaaccaattgga
gatccagtctttgcccgaaatttgttaacatttccagataatgtagagcactgtgaaaca
gtttttggtatgctgttaggagacaccattcttttggataatttggatgctgccaatcat
tatagaaaagaggttgttaaaattacacactgccccacactgctaaccagagatggagat
cgcattcgaagtaatgggaagtttgggggccttcagaacaaagctcctccaatggataaa
cttcgagggatggtatttggagctccagtacccaaacagtgcctagttttaggggaccaa
atagagcttctccggcagtaccgcactgctgtgtgcagattgggcactgtgaacaaggac
cttaatggccagctcgagtaccttcacactccggatatgaagaagaaaaagcaggaactg
gatgaacaggagaaaagtctgaaacttatagaacaaaagctaggtatgactcccacaaat
aaatgtaatgaaacacgtcaccaaacaaaagttgaaatgacagaatgtctgattcctcct
aagagaatgagaagagaatctacaagacaaagtaggattataaccaaagcagatgtgtga
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