Sorex araneus (European shrew): 101557300
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Entry
101557300 CDS
T07854
Symbol
DDX58
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
sara
Sorex araneus (European shrew)
Pathway
sara04064
NF-kappa B signaling pathway
sara04622
RIG-I-like receptor signaling pathway
sara04623
Cytosolic DNA-sensing pathway
sara05160
Hepatitis C
sara05161
Hepatitis B
sara05162
Measles
sara05164
Influenza A
sara05168
Herpes simplex virus 1 infection
sara05169
Epstein-Barr virus infection
sara05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
101557300 (DDX58)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
101557300 (DDX58)
04623 Cytosolic DNA-sensing pathway
101557300 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
101557300 (DDX58)
05160 Hepatitis C
101557300 (DDX58)
05171 Coronavirus disease - COVID-19
101557300 (DDX58)
05164 Influenza A
101557300 (DDX58)
05162 Measles
101557300 (DDX58)
05168 Herpes simplex virus 1 infection
101557300 (DDX58)
05169 Epstein-Barr virus infection
101557300 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sara04054
]
101557300 (DDX58)
Enzymes [BR:
sara01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101557300 (DDX58)
Pattern recognition receptors [BR:
sara04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
101557300 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
CARD_2
DEAD
ResIII
Helicase_C
AAA_25
Motif
Other DBs
NCBI-GeneID:
101557300
NCBI-ProteinID:
XP_004600432
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MTPGERENLIAFRDYVIKILDPTYIQCYVATWLSEEKLQFIQTEKNNKGATEAASIFFNY
LLELQEEGWFRAFLDALHQAGYSGLCEAFENWDFKKIDDLEDYRLLLRRLQPEFKTIVDP
LDLLPHIDECLITQEYEEISQVFNXYKMSRFGEXFEYGKFLSSIFHLEKGNWRSLKIFLE
DERQEYQDVFWSHEGAKKAEVEDLKDDEVETFDVHFVYQEEAENQNLSQNPCPPSEVSQT
YCPLKPRNYQLELALPAKEEKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFLA
NKLPVYEQQKSVFSKYFERYGYRVAGICGSTTMTIVVEEVIKSNDIIILTPQILVNALKN
GTVPSLSIFTLMIFDECHNTNKLHPYNMIMFSYLDQKLGKSSDPLPQVIGLTASVGVGNA
KSTPEAMDYIIKLCASLDASVIVTVKENLGELEEVVYKPQKFFRKVEARTNNRFKCIIIQ
LMREIENLAKKVFKEFENLSQLQTRDFGTQKYEQWIMIVQKVCSVLQMPDKNEESRICKA
LFLYTSHLRKYNDALIISEDAQLMDALDYLKDFYSEVRSAGFDEIEQDLTRRFEEKLPEL
ESLSVDPCNENPKLSDLCFILQEEYHVNPDTRTLLFVKTRALVKALKKWIEGNSQLNFLN
PGILTGRGKTSENLGMTLPAQKCVLDAFKTNGESKILIATSVAEEGIDIAQCNLVILYEY
VGNVIKMIQTRGRGRAKGSRCYLLTSSEEVIEKEEMNMYKEKMMNDSISKLQKFNEAEFK
EKVQKVQIHEKLLRDKNHSERARPVPDKKNKKLLCKKCKAFACYTDDIRVVEDNHHTVVG
KAFKECFESKLHPKPGTYGSFEKKEKIFCGKCKLDWGIHVKYKTFEIPVIKIQGFVVEDL
ETGQQRSYTKWKDFEFDKKQFDDADMILE
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgacacccggagagcgggaaaatctcatcgccttcagggactacgttataaagattctg
gaccctacctacatccagtgctacgtagccacttggcttagcgaggagaagctgcagttc
atccagactgagaaaaacaacaagggcgccacagaagctgcttcaatttttttcaattat
ttattggagctccaggaggaaggttggttccgtgcgtttctggatgcccttcaccaagca
ggttattctggactctgtgaagcctttgaaaattgggattttaaaaaaattgatgacctg
gaggactatagattgctcttaaggcgtttacaaccagaatttaaaaccatagttgatcca
ttagatctcctgcctcatatagatgaatgtctaatcactcaggaatatgaagaaatttca
caggtatttaattaatataaaatgtccagatttggggaataatttgaatatgggaaattt
ctttcttccatttttcatcttgagaaaggaaattggagatccttgaaaattttcttagaa
gatgagaggcaggaataccaagatgtattttggtctcatgaaggtgccaaaaaagctgaa
gtggaagatcttaaggatgatgaagtggaaacttttgacgtacactttgtctaccaggaa
gaagcagaaaaccagaatctcagtcagaatccatgtcctccttcagaagtgtctcagact
tactgcccattgaagccaagaaattaccaactggagcttgctttgcctgcaaaagaagaa
aaaaacacaataatttgtgctccaactggttgtgggaaaacctttgtatcacttcttata
tgtgaacaccatcttaaaaagtttccacaaggacaaaagggaaaggttgtctttcttgct
aataaactcccagtgtatgagcagcagaaatctgtgttttcaaaatattttgaaagatat
gggtacagagttgctggtatttgtggatcaacaactatgactatcgtggtggaagaggtt
attaagagcaatgatatcatcattttaacaccacagattcttgttaatgcccttaaaaat
gggactgttccatcactctccatcttcactttgatgatatttgatgaatgccacaacacc
aataaacttcatccttacaatatgattatgtttagttatctagatcagaaacttggaaaa
tcttcagacccactgccccaggttattggattgactgcctcagttggtgttgggaatgca
aaaagcactccagaagccatggactatatcatcaagctatgtgcctctctcgatgcatct
gtaatagtaacagtcaaggaaaacttgggggaactggaggaagtcgtttacaagccccag
aagtttttcaggaaagtagaagcaaggactaataacagatttaaatgcatcataattcag
ctgatgagagagatcgagaatttggcaaagaaagtctttaaagaatttgagaacttatct
cagttgcaaacgagggattttggaacccaaaaatatgagcagtggatcatgatcgttcag
aaagtgtgctcagtgttgcagatgccggacaaaaatgaagagagcaggatttgtaaagcc
ctgtttctctacacgtcccatttgcggaaatataatgatgccctcattatcagtgaggat
gcccaattaatggatgctttggattacttgaaagacttctactctgaggttcgatctgca
ggatttgatgagattgagcaagatctcactcggagatttgaagaaaagcttcctgaactg
gagagtctttctgtggatccctgcaatgagaatccgaaactcagtgacctctgcttcatc
ttgcaagaggagtaccatgtaaacccagacaccagaacccttctcttcgtgaaaaccaga
gcactcgtaaaggctttaaagaaatggattgaaggaaattcccaactcaactttctaaat
cctggcatattaactggacgaggcaaaacaagtgaaaacttaggaatgacccttccagca
cagaagtgtgtattggatgcattcaaaactaacggagagagcaagattctgattgccact
tctgttgctgaagagggcatcgatattgctcagtgcaatctggttatcctatatgaatac
gtgggcaatgtcataaaaatgatccaaaccagaggcagaggcagagcaaaaggtagcagg
tgctacctcttgacaagtagtgaggaggtcattgaaaaggaagaaatgaatatgtacaaa
gaaaaaatgatgaacgactccatctccaaacttcagaaattcaatgaagcagaatttaaa
gaaaaggtccagaaggtacagattcatgaaaaattactccgagataaaaatcactcagaa
agagcaagaccggtccctgataagaaaaataaaaaactactctgcaaaaaatgcaaagct
tttgcctgttatacagatgatataagagtggtggaggataaccaccatactgtggttgga
aaagcttttaaggaatgctttgagagcaagttacaccctaaaccaggaacctatggcagt
tttgagaagaaagaaaagattttctgtggcaagtgcaaattggactggggaatccatgtg
aagtataagacatttgagattccagtgataaagatccaaggttttgtggtggaagatctt
gaaacaggacaacagagatcatatacaaagtggaaggactttgaatttgataagaagcaa
tttgatgatgcagacatgatccttgagtag
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integrated database retrieval system
