Stenotrophomonas aracearum: PDM28_06680
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Entry
PDM28_06680 CDS
T10111
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
sarc Stenotrophomonas aracearum
Pathway
sarc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sarc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PDM28_06680 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sarc03400
]
PDM28_06680 (nth)
Enzymes [BR:
sarc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PDM28_06680 (nth)
DNA repair and recombination proteins [BR:
sarc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PDM28_06680 (nth)
Prokaryotic type
PDM28_06680 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
WNH49984
LinkDB
All DBs
Position
complement(1450511..1451197)
Genome browser
AA seq
228 aa
AA seq
DB search
MPTVAKAAPRAAPRSARMPKADVVEMFTRLRELNPHPNTELEYSTPFELLVAVALSAQAT
DVGVNKATRKLFPVANTPQAILALGEDGLKKYIATIGLFNAKAKNVIATCRLLIEQHGGE
VPRDRAALEALPGVGRKTANVVLNTAFGEPVMAVDTHIFRVANRTGLAPGKDVRAVEDGL
VKTIPAEFLLDAHHWLILHGRYVCKARKPDCPQCVIRDLCRFKQKTAA
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccgttgcaaaagccgcgccccgggccgcaccgcgcagcgcgcgcatgcccaag
gccgacgtggtggaaatgttcacccgcctgcgcgaactcaatccgcatcccaataccgaa
ctggaatacagcacgccgttcgaactgctggtggccgtggcgctgtcggcgcaggccacc
gatgtcggcgtcaacaaggccacgcgcaaactgttcccggtggccaacacaccgcaggcg
atcctggcgctgggcgaagacgggctgaagaaatacatcgccaccatcgggctgttcaat
gcgaaggcgaagaacgtgattgccacctgccggctgctgatcgaacaacatggcggcgag
gtgccgcgcgaccgcgccgcgctggaggccctgcccggggtcgggcgcaagaccgccaac
gtggtgctcaacaccgccttcggcgaaccggtgatggccgtggacacgcacatcttccgg
gtggccaaccggaccgggctggcgccgggcaaggacgtccgcgccgtcgaggacggcctg
gtgaagacgattccggccgagttcctgctcgacgcccaccattggctgatcctgcacggc
cgttacgtgtgcaaggcgcgcaagccggactgcccgcagtgcgtgatccgcgacctgtgc
cggttcaagcagaaaaccgccgcctga
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