Streptomyces argyrophylli: HKX69_10220
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Entry
HKX69_10220 CDS
T09378
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sarg
Streptomyces argyrophylli
Pathway
sarg03030
DNA replication
sarg03410
Base excision repair
sarg03420
Nucleotide excision repair
sarg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sarg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HKX69_10220 (ligA)
03410 Base excision repair
HKX69_10220 (ligA)
03420 Nucleotide excision repair
HKX69_10220 (ligA)
03430 Mismatch repair
HKX69_10220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sarg03032
]
HKX69_10220 (ligA)
03400 DNA repair and recombination proteins [BR:
sarg03400
]
HKX69_10220 (ligA)
Enzymes [BR:
sarg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HKX69_10220 (ligA)
DNA replication proteins [BR:
sarg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HKX69_10220 (ligA)
DNA repair and recombination proteins [BR:
sarg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HKX69_10220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HKX69_10220 (ligA)
MMR (mismatch excision repair)
DNA ligase
HKX69_10220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HKX69_10220 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
DUF8512
Zn_ribbon_CLPX_N
Motif
Other DBs
NCBI-ProteinID:
QJS09848
UniProt:
A0A6M4PFB9
LinkDB
All DBs
Position
complement(2348348..2350543)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTAVPAEARDKHAQLAEQVEEHRFRYYVKDAPVISDAEFDQLLKSLEALEER
YPELRTPDSPTQKVAGSYETEFTAVEHRERMLSLDNTFNDDDLAAWADRVARELGDQTYH
FLCELKVDGLAVNLTYEKGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDKVPDLVE
IRGEVYFPMEKFLELNERLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LAGFSGMTRLSQAYDLLKTWGLPTSPHNRVVDDLAGVREFIAYYGENRHSVEHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPGECP
ECGTPLRPMKEGDIDLRCPNARGCPAQLRERVSYLAGRECLDIEHFGAVAAAALTRPLEP
ADPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKVVTVFANQKGEPKKNT
LALLANIEEAKSRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIEQATEEELAATDGVG
PIIAAALKEWFAEDWHREIVRKWKAAGVPLEDQSSGEEEGPRPLEGLTVVVTGTLENFTR
DGAKEALQRQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFGVLLEQGPE
AAAEVALPTGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaggcggagacgacggcggtgcccgccgaggcccgcgacaagcac
gcgcagctggcggagcaggtcgaggagcaccgcttccggtactacgtgaaggacgctccc
gtcatcagcgacgcggagttcgaccagctcctgaagtccctggaggccctggaggagcgg
tacccggagctgcgcaccccggactcgcccacccagaaggtcgcggggtcctacgagacg
gagttcacggcggtcgagcaccgcgagcggatgctctcgctcgacaacacgttcaacgac
gacgacctggccgcctgggccgaccgcgtcgccagggagctgggcgaccagacgtaccac
ttcctgtgcgagctgaaggtggacggcctcgcggtcaacctcacctacgagaagggccgc
ctcacacgcgcggccacccgcggcgacggccgcaccggcgaggacatcacgccgaacgtc
cggacgatcgcggagatcccggaccgcctgacgggcgacaaggtgcccgacctggtggag
atccgcggcgaggtctacttcccgatggagaagttcctcgaactgaacgaacgcctggtc
gcggccggcgacaagcccttcgccaacccccgcaacgccgccgccggttcgctgcgccag
aaggacccgcgggtcaccgcgacccgcccgctgcacatggtcgtccacggcatcggcgcc
ctggcgggcttctcgggcatgacccggctctcgcaggcgtacgacctgctgaagacctgg
ggcctgcccacctccccgcacaaccgcgtggtcgacgacctcgccggcgtacgggagttc
atcgcgtactacggcgagaaccgccactccgtcgagcacgagatcgacggtgtcgtggtc
aagctggacgagatccgcctccagggccggctcggctccaccgcgcgggcaccgcgctgg
gcgatcgcctacaagtacgcgccggaggaggtcaacaccaagctcgtcgacatcaaggtg
ggcgtcggccgcacgggccgcgtcacgccgtacgcgcaggtcgagccggtcacggtcgcg
ggcagcgaggtggagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggcgtg
ctcatcggggacaccgtggtcctgcgcaaggccggcgacgtcatcccggagatcctgggc
ccggtggtcgacctcagggacggcagcgagcgggagttcgtgatgccgggcgagtgtccc
gagtgcgggacgccgctgcggcccatgaaggagggcgacatcgacctccgctgccccaac
gcgcgcggctgccccgcccagttgcgcgagcgggtgtcctacctcgccggccgggagtgt
ctggacatcgagcacttcggcgcggtggccgccgccgcgctcacccgtccgctggagccg
gccgacccgccgctggtggacgagggcgacctgttcgacctgacggtggagaagctgctg
cccatcaaggcctacgtcctcgacccggacagcggcctgcccaagcgcgacccgaagacc
ggcgaggagaaggtcgtcacggtcttcgccaaccagaagggcgagccgaagaagaacacc
ctcgccctgctggcgaacatcgaggaggccaagtcccgtccgctggcccgcttcctgaac
gggctgtcgatccggcacgtgggaccggtggccgcgcaggcgctggcgcgcgagttccgg
tccatcgaccgcatcgaacaggcgaccgaggaggagctggcggccaccgacggcgtcggc
cccatcatcgccgccgcgctcaaggagtggttcgccgaggactggcaccgcgagatcgtc
cgcaagtggaaggccgcgggcgtccccctggaggaccagtcgtccggcgaggaggagggg
ccgcgtccgctggaggggctcacggtcgtcgtcaccggcacgctggagaacttcacccgg
gacggcgccaaggaggcgttgcagcgccagggcgcgaaggtgaccggttcggtgtcgaag
aagacctcgttcgtcgttgtgggtgacaaccccggatcgaagtacgacaaggccatgcag
ctgaaggttcccgtgctgaacgaggacggtttcggcgtcctgttggaacagggccccgaa
gcggcggccgaagtcgcgcttccgaccggggagtag
DBGET
integrated database retrieval system
