Candidatus Sarcina troglodytae: HH195_09175
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Entry
HH195_09175 CDS
T06935
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sarj
Candidatus Sarcina troglodytae
Pathway
sarj03030
DNA replication
sarj03410
Base excision repair
sarj03420
Nucleotide excision repair
sarj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sarj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HH195_09175 (ligA)
03410 Base excision repair
HH195_09175 (ligA)
03420 Nucleotide excision repair
HH195_09175 (ligA)
03430 Mismatch repair
HH195_09175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sarj03032
]
HH195_09175 (ligA)
03400 DNA repair and recombination proteins [BR:
sarj03400
]
HH195_09175 (ligA)
Enzymes [BR:
sarj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HH195_09175 (ligA)
DNA replication proteins [BR:
sarj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HH195_09175 (ligA)
DNA repair and recombination proteins [BR:
sarj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HH195_09175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HH195_09175 (ligA)
MMR (mismatch excision repair)
DNA ligase
HH195_09175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HH195_09175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
DNA_pol_lambd_f
5_3_exonuc
BRCT_2
RNA_pol_A_CTD
Nlig-Ia
YhfH
Motif
Other DBs
NCBI-ProteinID:
QPJ86070
LinkDB
All DBs
Position
complement(1982028..1984028)
Genome browser
AA seq
666 aa
AA seq
DB search
MDKKIIIENLVNELNKYANEYYVLGNPSVSDKEYDKKYDELVNLERETGYVIPYSPTQRV
GDKILPEFKKYAHKGKLFSLDKAQSIEEIRDWHVKNLKFIDEYNRVNPDKKLPSLKYIVT
KKFDGLTVNLSYDENGVLLTGATRGTGTIGEDVTAQIKTIKSIPLKIDFDDFIEVHGEAL
MTKEAFEKYNKDALIPLKNLRNGAAGALRNLNVAETVKRNLSTFFYDIGYSKNTKFKTYK
SMLEFLKFKGFPVDSYIRVCTSLDDIKKEIEYIENIRFDLNYDIDGLVIAIDDIETRELL
GNTVKFPKWAIAYKFEAQETTTTLLDVEWNVGRSGRVTPTAILEPVELAGVTVKRATLNN
IDDISRKGIKINLRVFVRRSNDVIPEIMGISQDSFENGIDIIPPKVCPACGSHLIKEEKG
VHIYCENSLGCKPQMVKAIVHFAGREAMNIEGFSEKTAEQLFEKLDIRAISDLYRLTYEE
LLSLDKFGDKKANNLLNAIERSKNCSLESFIYSLNIPNVGIKTAKDLVKQFKSLDAIKRA
TFDELIQVADIGDIVANSIINFFKEERILKIIDDMINIGVTPVYEEKFVTNNEFEGKTVV
VTGTLENYSRTQIKQKLESLGAKVSSSVSKKTDYVIVGKEAGSKYEKAKLLKLNILSEIE
FEDKLK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
gtggataaaaaaattataatagaaaatttagttaatgaattaaataaatatgctaatgaa
tattatgttcttggaaatccatcagtttcggataaagaatatgataaaaagtatgatgaa
cttgtaaacttagaaagagaaacaggatatgtgattccttattcaccaactcaaagggtt
ggtgataagatacttcctgaattcaaaaaatatgctcataaaggaaaactttttagttta
gataaggctcaaagtatagaagaaataagagattggcatgttaaaaatttgaaatttata
gatgaatataacagagtaaatcccgataaaaaacttccaagcttaaagtatatagttact
aaaaaatttgatggactaacagttaatttgtcatatgatgaaaatggggttttgctaact
ggagcaacaagaggaactggaactataggagaggatgtaacagcgcaaattaaaacaata
aaatcaattcctttaaagatagactttgatgattttattgaagtacatggagaagctctt
atgactaaagaagcttttgaaaaatacaataaagatgctctaattcctcttaaaaactta
agaaatggtgcggcaggagctttaaggaatttaaatgtagcagaaactgttaaaagaaat
ttatcaacttttttttatgacataggatatagtaaaaatacaaagtttaaaacatacaaa
agtatgttagaatttttaaagtttaaagggtttccagtggattcatacataagggtatgc
acatctttagatgatattaagaaggaaatagaatatatagaaaatataagatttgattta
aattatgatatagatggattggttatagcaatagatgatatagaaactagagaactttta
ggtaatactgtgaaattccctaagtgggcaatagcttataaatttgaagcacaagagaca
acaacaacgcttttagatgtagaatggaatgttggaagaagtggtagggttacaccaact
gctatattagaaccagtagaattagctggagtaacagttaaaagggcaactttgaataat
atagatgacatatctagaaagggtataaaaataaatttaagggtatttgtacgaagaagt
aatgatgttataccagaaattatgggaatttcacaagatagttttgaaaatggaatagat
ataattccaccgaaagtttgcccagcttgtggctctcatcttataaaagaagaaaaagga
gttcatatatattgtgaaaactctttagggtgtaaacctcaaatggtaaaggctatagtt
cattttgctggcagagaagcaatgaatattgaagggttttcagaaaaaacagctgaacaa
ctttttgagaaattggatataagagcaatatcagatctttatagattaacttatgaagag
ttgttgagtttagataaatttggagataaaaaggctaataatttattaaatgcaatagaa
agaagcaaaaattgttcattagaatcttttatatactctttaaatatacctaatgtgggg
ataaaaacggctaaagatttagtgaaacagtttaaatctttagatgccataaaacgagcg
acttttgatgaacttatacaagtggcggatattggagatatagtagctaatagtataata
aacttttttaaagaagagagaatactaaaaattatagatgatatgataaatataggagtt
acacctgtatatgaagagaaatttgtaacaaataacgaatttgagggtaaaactgtagta
gttacaggaacattagaaaactattcaagaacgcaaataaaacagaaattagaatcttta
ggggctaaggtttcaagtagtgtaagtaaaaagacagactatgtgatagttggaaaagaa
gcaggttctaaatatgaaaaagcaaaattattaaaattaaatattttatcagaaattgaa
tttgaagataaattaaagtaa
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