Staphylococcus arlettae: SAP2_09510
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Entry
SAP2_09510 CDS
T06808
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sarl
Staphylococcus arlettae
Pathway
sarl03030
DNA replication
sarl03410
Base excision repair
sarl03420
Nucleotide excision repair
sarl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sarl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAP2_09510 (ligA)
03410 Base excision repair
SAP2_09510 (ligA)
03420 Nucleotide excision repair
SAP2_09510 (ligA)
03430 Mismatch repair
SAP2_09510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sarl03032
]
SAP2_09510 (ligA)
03400 DNA repair and recombination proteins [BR:
sarl03400
]
SAP2_09510 (ligA)
Enzymes [BR:
sarl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAP2_09510 (ligA)
DNA replication proteins [BR:
sarl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAP2_09510 (ligA)
DNA repair and recombination proteins [BR:
sarl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAP2_09510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAP2_09510 (ligA)
MMR (mismatch excision repair)
DNA ligase
SAP2_09510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAP2_09510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
DUF6933
HHH
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BBK27767
LinkDB
All DBs
Position
987269..989275
Genome browser
AA seq
668 aa
AA seq
DB search
MSQQIEQRVETLRQLLNQYSYEYYVKDQPSVPDSEYDKLLHELIDIEVAHPEMKTADSPT
VRVGGTAQSTFEKVKHDTPMLSLGNAFNEEDLRKFDQRIHDQIGTVEYMCELKIDGLAVS
LKYENGVFVKGLTRGDGTTGEDITENLKTIHAIPLKIKKPLTFEVRGEAYMPRSSFLKLN
EEKAQNEEQPFANPRNAAAGSLRQLDARLAAKRKLSVFLYSVNNFTEFDATTQSGALDEL
DELGFKTNQKRKKVGTIDEVLEFISYWTEQRESLSYDIDGIVIKVNDIEQQEEMGYTQKS
PRWAIAYKFPAEEVVTQLHDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDLIHE
KDIRIGDSVVIKKAGDIIPEVVYSIVERRPEGVETYHMPTHCPSCNHELVRIEGEVALRC
INPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYENNKIKDVADIYYLTEEDLLPLER
MGTKKVSNLLSAIEASKENSLEQLLFGLGIRHLGVKASQVIAEKYGTIDKLFEVTEEELI
EIHDVGHKLAQSVVTYLDNEDIRALINKLKEKHVNMDFKGVRTTNIEGHPDFKDKTIVLT
GKLHQMTRNEAAQWLELQGAKVTNSVTKKTDVVIAGDDAGSKLAKAEKFGTTVWSENDFI
AKQKEIMN
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaacaaattgaacaacgtgttgaaacgttacgacaattattgaatcaatatagt
tatgaatactatgtaaaagatcaaccttcagtaccagatagtgaatatgataagttatta
cacgagttgattgatatagaagtagcacatcctgaaatgaaaactgcagattctccgacc
gttagggtgggaggaactgcacaatcaacgtttgaaaaagtaaaacacgatacccctatg
ttaagtttgggaaatgcttttaatgaagaagatttaaggaaatttgaccagcgaatacat
gatcaaataggcacagtagagtatatgtgtgaattgaaaattgatgggttagcagtgtca
ttaaaatatgaaaatggtgtatttgtaaaaggtctaactcgtggcgatggcacaacgggt
gaagatattacagagaatttaaaaaccattcatgccattccattaaaaatcaagaagcca
cttacatttgaagttcgcggtgaagcatatatgcctagatcctcatttttaaaattaaat
gaagaaaaggctcaaaacgaggaacagccatttgctaaccctcgtaatgctgcagcaggc
tcactaagacaattggatgcacgtttagctgccaaaagaaagctcagtgtgtttttatat
agtgtaaataattttacggaatttgatgcaactacacaaagtggcgctttagatgaatta
gatgaacttggttttaaaacgaatcaaaaacgtaaaaaagttggaactattgacgaagta
ttggaatttatatcttattggactgagcaacgtgaatcactgtcttacgatatagatggc
atagtcattaaagtgaatgatattgaacaacaagaagaaatgggatatacacaaaaatca
ccacggtgggcaattgcatataagtttcctgctgaagaagtagttactcaattacatgat
attgaattgagtattggacgtacaggagtagtaacaccaacggcgattttagagccagtt
agagtcgctggcacaacagtatcaagagcttcattacataacgaagatttaattcatgaa
aaagatattcgaattggtgatagcgtagtaatcaaaaaagcaggcgatattataccagag
gtcgtatacagtattgttgaaaggcgtcctgaaggtgttgaaacatatcatatgccgaca
cattgtcctagctgtaaccacgaattagttcgtattgaaggagaagttgcgttaagatgc
attaatcctaagtgtcaggcacaattagttgaaggactaatacattttgtatctcgccaa
gctatgaatattgatggtctaggcacaaaaattattcaacagctttatgaaaataataaa
attaaagatgtagcggatatttattatttaactgaggaagatttgttgccattagagaga
atggggactaaaaaagtaagtaacttattatcagctattgaagcctcaaaagaaaattca
ctcgaacagttattgtttggactaggtattagacatttaggtgtaaaagccagtcaagtg
attgcagagaaatacggtacgattgataaattatttgaagttacggaagaagaacttatt
gaaattcatgacgtaggtcacaagctagcgcaatctgttgtaacgtatttagacaacgaa
gatattcgtgcactcattaataaattaaaagaaaaacatgttaatatggattttaaaggg
gtccgtacaactaatatagaaggacatcctgactttaaagataagacaattgtgttaact
ggcaaattacatcaaatgactagaaatgaagctgcacaatggctagagttacaaggtgcc
aaagtaactaacagtgtaactaaaaaaacagatgtcgttattgccggtgatgatgcagga
tctaaattagcgaaagcggaaaaattcggtactacggtatggagtgaaaatgactttatc
gcaaaacaaaaagaaattatgaattag
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