Salmo salar (Atlantic salmon): 106563669
Help
Entry
106563669 CDS
T04363
Name
(RefSeq) short transient receptor potential channel 5-like
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sasa01009
]
106563669
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sasa04040
]
106563669
Protein phosphatases and associated proteins [BR:
sasa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106563669
Ion channels [BR:
sasa04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
106563669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
Ank_5
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
106563669
NCBI-ProteinID:
XP_013984928
LinkDB
All DBs
Position
ssa11:81825197..81873714
Genome browser
AA seq
1064 aa
AA seq
DB search
MMNPMAQLYYKKASYSPYRDRIPLQIVRAEAELSAEERAYLTAVEKGDYAGVKLALQEAE
IYYNINVNCLDPLGRSALLIAIENENLEVMELLLNHGVHVGDALLYAIRKEVVGAVELLL
SHRRPSGEKQVPNLMMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRC
DCVACVSSSEVDSLRHSRSRLNVYKTLASPSLIALSSEDPILTAFRLGWELKELSKVENE
FRQEYEELSQQCKLFAKDLLDQARSSRELETILNHRDYLSEELDPKDCRDLAKLKLAIKY
HQKEFVSQPNCQQLLATLWYDGFPGWRRRHWAVKLVTCFTIGLLFPIFSLVYLLAPRSAL
GLFIKKPFIKFICHTASYLTFLFLLLLASQHIVRTDLHVQGPPPTVVEWMILPWVLGFIW
AEIKEMWDGGFTEYVHDWWNLMDFAMNSLYLATISLKLVAYFKYNSSRPREEWEMWHPTL
IAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLN
QLYFYYETKASDEPNNCKGIRCEKQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEF
TEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGT
LPPPFNIVPSPKSVWYLCVWTYNRLCGGNLPSPDDRRKHENLKEFTERHADNLIQNQHYQ
EVIRNLVKRHVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRKPPRRTYSSS
NEATQQDEINKEGEGGAGQGQSRDQGAKGVSFSMSTAERKNKDSGFSVSALFKSMSGVEG
PVDNKPKCNGLRFSSSSPSFAVFSRSGGQLQRFSKSKRDSIRQLGLLFSRMNGHVPEHRA
PPPCMHQPTYSISDGLLHQPTTWPDVHISPNPQVTRSQNLKELPQAQPPTQAPPQGSPQQ
ANGSDSLLLPPPGLSLPPPGHSLPPPGLSLPPPGLSLPPPGLSQPPPGLSQPPLRCASGI
RASSSQAVLLGSSEDMYEGWIGPCDELDSSEWGAEQEDSITTQL
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatcccatggcccagctgtactacaagaaggcgagctactcgccgtaccgcgac
cgcatcccgctgcagatcgtgcgggcggaagcggagctgtcagcggaggagcgggcgtac
ctgacggcggtggagaagggcgactatgccggggtgaagctggccctgcaggaggcggag
atttactacaacatcaacgtgaactgtctggacccgctggggcgcagcgcactgctcatt
gccatcgagaacgaaaacctggaggtgatggagctgctgctcaaccacggcgtgcacgtg
ggcgacgcgctgctctacgccattcgcaaggaggtggtgggcgctgtggagctgctgctg
tcccaccgcaggcccagtggagagaaacaggtgcccaacctgatgatggatacccagttc
tcagagtttacccctgacatcacacccatcatgctggcagctcacaccaacaactacgag
atcatcaagctgctggtccagcgcaaggtgaccatcccccggccacaccagatccgctgt
gactgcgtggcgtgcgtgtccagctccgaggtggacagcctgcgccactcccgctctcgc
ctcaatgtctacaagaccctagccagcccgtccctcattgccctgtccagcgaagacccc
atcctgaccgccttccgcctgggctgggagctgaaagagctgagcaaggtggagaatgag
ttccgtcaggaatacgaggagctgtcccagcagtgtaagctgtttgccaaggacctgctg
gaccaggccaggagctccagagagctggagaccatcctcaaccaccgtgactacctcagt
gaggagctggatccaaaggactgccgcgacctggccaagctcaaactggccatcaagtac
catcagaaagagtttgtgtcccagccaaactgccagcagctcctggccaccctgtggtac
gacggtttcccggggtggcgcagacgccactgggcggtcaagctggtcacctgctttacc
atcggcctgctcttccccatcttctccctggtctacctgctggcccccaggagtgccctg
ggcctcttcatcaagaagcccttcatcaagttcatctgccacacagcctcctacctgact
ttccttttcctcctcctcctggcctcccagcacatcgtgagaacagacctgcacgtccag
ggcccaccgcccaccgtggtggagtggatgatccttccctgggtgctgggctttatctgg
gctgagataaaggagatgtgggacggcggtttcactgagtacgtccatgactggtggaac
ctgatggactttgccatgaactctctctacttggccactatctcactgaaactagttgct
tacttcaagtacaacagctctcggccgcgggaggagtgggagatgtggcacccaacgctg
atcgccgaggccctgtttgctatcgccaacatcttcagctccctgcgcctcatctccctg
ttcacagccaactcccacctggggcctctgcagatctccctgggacgcatgctgctggac
atccttaagttcctcttcatctactgcctggtgctgctggccttcgctaacgggctcaac
cagctgtacttctactacgagaccaaggcctcggacgagcccaacaactgcaagggcatc
cgctgtgagaagcagaacaacgccttctctacgctgtttgagacgctgcagtccctgttc
tggtcgatattcggcctgctcaacctgtacgtgaccaatgtgaaggcacgccatgagttc
acagagtttgtgggagccaccatgttcggcacctacaacgttatctccctggtggtgctg
ctcaacatgctcatcgccatgatgaacaactcctatcagctcatcgctgaccatgcggac
attgaatggaagtttgcccgcaccaagctgtggatgagttattttgacgagggaggaact
ctcccgccacccttcaacattgtccccagccccaagtcagtgtggtacctgtgtgtgtgg
acgtacaaccgcctgtgtggagggaacctgcccagccctgacgaccggaggaaacacgag
aacttaaaggagttcacggagcgtcatgctgacaacctgattcagaaccagcactatcag
gaggtgatcaggaacctggtaaagaggcatgtagcagccatgatccgcagtgctaagaca
gacgagggactgactgaggagaattttaaggagctgaagcaggacatctccagtttccgc
tatgaggtgttggatctgctggggaacaggaagcccccgcggagaacctattcatccagc
aatgaggccactcagcaggacgagatcaacaaggagggggagggaggggccggacagggt
cagtccagggaccaaggggccaagggggtgtccttcagcatgtcaaccgctgagaggaaa
aacaaggactctgggttcagtgtctccgccctctttaagtccatgtcaggggtggagggg
ccagtggacaacaaaccaaagtgcaacgggctgcggttctcctcctcctccccttccttt
gctgtgttcagccgcagtggtggccagctgcagcgcttctccaagtccaagagagactcc
atcaggcagctgggtctgctcttctctcgcatgaacggacacgtcccagagcacagggcc
cctcctccctgcatgcaccagcccacctacagcatctcagatggcctacttcatcagccc
acaacctggccggacgtccatatctcccccaatccccaggttacacgtagccagaacctg
aaagagctaccccaggcccaaccccctacccaggccccaccccagggttcaccccagcag
gctaacgggagtgacagcctgctcctgccgcccccgggcctctccctgccgcccccgggc
cactccctaccgcccccgggcctctccctaccgcccccgggcctctccctaccgcccccg
ggcctctcccagccgcccccgggcctctcccagccgcccctgcgctgtgcttctggcatc
agggcctccagctcccaggctgtcctcctgggctctagtgaggacatgtatgagggctgg
ataggaccatgtgatgagctggactcttcagagtggggggctgagcaggaggactccatc
accacacagctttag
DBGET
integrated database retrieval system
