Salmo salar (Atlantic salmon): 106564592
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Entry
106564592 CDS
T04363
Symbol
kdm2b
Name
(RefSeq) lysine demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
106564592 (kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106564592 (kdm2b)
04121 Ubiquitin system [BR:
sasa04121
]
106564592 (kdm2b)
03036 Chromosome and associated proteins [BR:
sasa03036
]
106564592 (kdm2b)
Enzymes [BR:
sasa01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
106564592 (kdm2b)
Transcription factors [BR:
sasa03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
106564592 (kdm2b)
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
106564592 (kdm2b)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
106564592 (kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
106564592 (kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
F-box
JmjC
Cupin_8
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
106564592
NCBI-ProteinID:
XP_013986216
UniProt:
A0A1S3L5G7
LinkDB
All DBs
Position
ssa01:120695437..120745877
Genome browser
AA seq
1420 aa
AA seq
DB search
MNEWRRDGSGCPTGETLTVKKRSICRTMYDENEDFSDVEEIANVRGFNLEEKLVSDSYNT
HFVQLMDGKDFTYEYVQREALQTPLIFKAKDGLGIRMPDPEFTVSEIKGLVGSRRAVDVM
DVSTQKGSEMSMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLIKRPNVVDLVDWVDN
MWPLKLKRRQTEATNVISEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHVFKGGKVF
WLVPPTPHNLALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPED
TLVFGGNILHSFNIPMQLSIYEIENRTKVNSKFRYPFYHEMCWYVLERYVHCLTKRSHLT
LEFRREPLLIDLETKLSTESPSSDSRSQDMDEEDSCETQQGRDEQGDRSAFDDPCSPDNR
KGKSSGLRHLKAALSNDSEDSCIPTSTQPPEFPKTPFGSPVSESQSKWTHLTEFELKGLK
ALVEKLEALPENKKGVPDGIKDPQALLEDMKVVLKEHEDDDPKMAATGVPVVFWPKKSAK
QQRPPNRPKPKMAASSPAAAVKLSASRSTSGARRRRTRCRKCEACLRTECGECHFCKDMK
KFGGPGRMKQSCIMRQCIAVGLRLILTTPVLPHTAVCLVCGEAGKEDTVEEEEDKFNRML
MECSICNEIVHPLCLKVKDSGGVVNDELPNCWECPKCNHSGKTGKAVKQKRGPGFKYASN
LPGSLLKDSRLNRDIKEEPDPPSLPTSPTGTTETMTTVKRKAERDDTPKTKAEESPPLKK
RSPMLSLGGLPRPRPEDNPLRKKRMLFDIKDEDEPPVVKKKKKPPKSDDLLIPKLLKTIK
QEQVDEDEEHKDHEDEEQDRCTGDRVATKGKREEGEEDGDEEEEKDGGVADSKDGTVKTM
LSPLLRTSTARESDQSCSSSPRAGPSSEGCDAPEKTPGQLKARKRRRLPNKELSKELSKE
LNLEIQKTEDCLANQNRRPLKREDSPANNSRRPLKTEDSSTNPNRRPLKTEDSPANHNRR
PIKTEDGLSNHNRRPLKTEDRLVNQNHRPMKTEPESDGEEPKPKRPLNNCTSDLGDWLHP
RGRELNGTPRQISPLGWNRSPPITPICPRPPPCRSPPKCVQMERHVIRPPPISPPPDRLP
LEDGQTHMMHREVWMAVFGHLAHRDLCVCMRVCKTWNRWCCDKRLWTRIDLNRCKSITPL
MLSGIIRRQPVALDLSWTNISKKQLSWLINRLPGLRMLLLSGCSWVAVSALCTASCPLLR
TLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRSKLRNVVDLRLAGLDITDTSLRLLIRY
TPQLTRLDLSYCNHVTDQSVNILTAAGTTTRDSLTDINLSVCNRVTDQSLTYFKRCGSIC
HIDLRYCKQVTKEGCERFVAEMSVSVQFGLVEEKLLQKLC
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagtggagacgagatggtagtggatgccccacaggagaaacactaacagtgaag
aagcgctccatctgccggacaatgtatgacgaaaacgaggacttctctgacgttgaagaa
attgcaaatgtcaggggtttcaatctggaggagaaacttgttagcgactcatacaacaca
catttcgttcagttgatggatggcaaagatttcacttatgagtatgttcagagagaggca
cttcagacccctcttattttcaaagccaaagatggactgggaatcagaatgccagacccg
gagttcaccgtcagtgagattaaaggtttggttggtagccgtcgtgccgttgatgtgatg
gatgtgagcacccagaaaggctcggagatgagcatggcccagtttgtccgctactatgag
acacctgaggaagagagggacaaactcttcaatgttatcagcctggagttcagccacacc
aaactggagaacctcatcaagaggcccaatgtggtggatttagtggactgggtggacaac
atgtggcccctaaaactgaaacgaagacaaaccgaagccactaatgtcatctcagagatg
aagtaccccaaagtacagaagtactgtttgatgagcgtgaagggctgctatactgacttc
cacattgatttcgggggcacgtctgtgtggtatcacgttttcaaaggagggaaggtgttc
tggctggtgcctccgacacctcataaccttgccctgtatgaggactgggttctgtcaggc
aagcagagtgacatcttcctgggagaccgtgcagatggctgccagagggtggagctgaaa
cagggctacaccttcttcatcccctctggctggattcatgcagtctacacacctgaggac
acgctggtgttcggaggcaacattctgcacagctttaacattcccatgcaactctccatc
tatgagatagagaataggactaaggttaattccaagttccgctacccattctaccatgag
atgtgctggtatgtcctggagaggtacgtgcactgcctgaccaagcgctcccatctcact
ctggagttccgcagagagcctctgctaatcgacttggaaactaagctgagcacagagagc
ccctcctctgactcccggagtcaggacatggacgaggaggactcctgcgagacgcaacag
ggacgagatgaacagggtgacaggtcagcatttgatgatccctgctctcctgataacagg
aagggtaaatccagtggccttcggcacctcaaagctgccttgtccaatgattctgaggac
agctgcatccccacctccacccagcctccagagttccccaaaaccccctttggctcgcca
gtctcagagtctcagagtaaatggactcatctgactgagtttgaactgaagggcctcaag
gcccttgtggagaaactggaagccctccctgaaaataagaagggtgttccagatggcatc
aaggacccccaggccctgctggaggacatgaaggttgtcttgaaggaacatgaagacgat
gatcccaaaatggctgccactggagtacctgtggtgttctggcccaagaagtctgccaag
cagcagcggcctcccaacagacccaaacccaaaatggcggcctcgtctcctgcggctgcg
gtcaagctgtcggccagccggagcacgtctggcgcccggaggaggaggacgcgttgtcgg
aagtgcgaggcgtgcctgcggacagagtgtggagaatgccacttctgtaaagacatgaag
aagtttggagggccaggtcgcatgaaacagtcctgcatcatgaggcagtgtatagcggta
ggtctccgactaatcttaactacacctgtcctgccccacacagcggtgtgtctggtgtgt
ggagaggcagggaaggaggacacagtggaggaagaggaggacaagtttaaccgcatgctc
atggagtgctccatctgcaatgagatagtccatcctctctgcctcaaggtgaaagattcc
ggtggagttgtaaatgacgagttgccaaactgctgggagtgtccaaaatgcaaccattca
gggaagacagggaaagccgtcaagcaaaaaagaggaccagggttcaagtacgcgtccaac
cttcccgggtcgctgctgaaggactcacgattgaaccgtgacatcaaggaagagcccgac
ccgcccagtctgccaacatcacccactgggaccacggagaccatgaccacagtgaagagg
aaggcggagcgtgatgacacccccaaaacgaaagcagaggaatcgcctcctctgaagaaa
cgttctcccatgctgtctctgggcgggctgccccgacccaggcctgaggacaaccctctg
aggaagaagaggatgctgttcgacatcaaagatgaggacgagcctcctgttgtcaagaaa
aagaagaagcccccaaaatctgatgaccttttgatccccaagctgttaaagaccatcaag
caagagcaagtagatgaggacgaagaacacaaagaccatgaagatgaagagcaggacaga
tgcacaggggacagggttgcaactaaagggaaaagagaagagggggaagaggatggagat
gaggaggaggagaaagatggtggtgtagcggacagtaaagacggtacagtaaagactatg
ctgagtccactgctacggacgtctacagccagagagagtgaccagtcctgctccagctct
ccccgggcagggcccagcagtgaagggtgcgatgccccagagaagacacctggccagctg
aaggcacgcaagcgccgccgcctccccaacaaagagctgagcaaggagctgagcaaagag
ctcaatctggagattcagaagaccgaggactgcctggccaatcagaaccgcagaccactg
aagagggaggacagcccagccaataacagccgtcgacccttgaaaactgaggactcttcg
accaatccgaaccgcagaccactaaaaacagaggactcccctgccaatcataaccgcagg
ccaattaagactgaggatggcctatccaatcacaaccgccggccattgaagaccgaggac
cgcttagtcaatcagaaccacaggccaatgaagacagagcctgagagcgacggggaggag
cctaagcccaagcggccactcaacaactgcaccagtgacctcggagactggcttcacccc
agggggcgggaattaaacgggacgccccgccagatctcgcccctggggtggaaccgcagc
cctccgatcacacccatttgcccacgcccccctccctgccgctcaccacccaagtgtgtc
cagatggagcgtcacgtgatccgaccgcctcccatcagccccccgccagacagactgccc
ctggaagacggacagacccacatgatgcacagggaggtgtggatggccgtgttcgggcac
ctcgcacacagagacctttgtgtctgcatgcgcgtctgcaagacctggaacagatggtgc
tgtgataagaggctgtggacgcggatcgatctaaaccgctgtaagtccatcactcccctc
atgctgagtggcatcatccgcagacagcctgtggctctggacctcagctggaccaacatc
tccaagaagcagctcagctggctcatcaacagactgccaggtctgcggatgctgctgctc
tcaggctgctcctgggtggctgtgtctgccctctgcaccgccagctgcccgctgctgagg
accctggacgtccagtgggtagaggggctcaaagatgcccagatgagggacctgctctca
ccccccacagacaacagaccaggtcagctggacaacaggagtaagctgcggaacgtggtg
gacctgcgtctggccgggctggacatcacagacacctccctgcgcctcctcatccgctac
acgccccagctgaccagactggacctgagctactgcaaccacgtcactgaccagtcagtc
aacatcctgaccgctgcagggaccaccaccagagactcgctcactgacatcaacctctct
gtgtgcaacagagtcacggaccagtcgctgacctacttcaagcgctgtggaagcatctgt
catattgacttgcgctactgcaagcaggtgaccaaggagggctgtgagcggttcgttgct
gagatgtcagtgagtgtacagtttggacttgtagaggagaaactactgcagaaactctgt
tag
DBGET
integrated database retrieval system
