Salmo salar (Atlantic salmon): 106579155
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Entry
106579155 CDS
T04363
Symbol
brca1
Name
(RefSeq) BRCA1, DNA repair associated
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03440
Homologous recombination
sasa03460
Fanconi anemia pathway
sasa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106579155 (brca1)
09124 Replication and repair
03440 Homologous recombination
106579155 (brca1)
03460 Fanconi anemia pathway
106579155 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sasa01009
]
106579155 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sasa04121
]
106579155 (brca1)
03036 Chromosome and associated proteins [BR:
sasa03036
]
106579155 (brca1)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106579155 (brca1)
Enzymes [BR:
sasa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106579155 (brca1)
Protein phosphatases and associated proteins [BR:
sasa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106579155 (brca1)
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106579155 (brca1)
Multi subunit type E3
BRCC complex
106579155 (brca1)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
106579155 (brca1)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
106579155 (brca1)
BRCA1-A complex
106579155 (brca1)
BRCA1-B complex
106579155 (brca1)
BRCA1-C complex
106579155 (brca1)
BRCA complex
106579155 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
106579155 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
BRCT_2
zf-C3HC4_2
zf-C3HC4_4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-Nse
zf-RING_5
PTCB-BRCT
zf-ANAPC11
zf-MIZ
RTT107_BRCT_5
zf-rbx1
zf-RING_4
YafT
zf-RING_6
TRAF3_RING
U-box
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
106579155
NCBI-ProteinID:
XP_014014233
UniProt:
A0A1S3NGH2
LinkDB
All DBs
Position
ssa19:complement(56100511..56142022)
Genome browser
AA seq
1588 aa
AA seq
DB search
MQNFSRTSVLFDKFSCAAHEKMNTMKSPKAEDVRRGISVIWEILQCPICLELMSTPVSTK
CDHQFCKFCIMKLLDSSRRKEANCPVCKTKITKRSLQESPGFQKLAEGLQNMVQAYEHDT
CTNYFTGMSQMRRHMSVTETVQKKNIHDVSSDDVWATDRADGEDHEFPMSCSSTIAAKDG
FAKLMGLEDSCPVISDEGFDSGLGDIPPATEKDTDDSKATSTTEKRKAALEAEIPKVVER
APSRPQKLGKKITTHPQDPPCRPEKVGNQPVRRSSRNNKRESLTEMIDQNQKKSLEKVSE
WLMNNSSTEVNSEKEKNTEGSDDSVSLAGSCSASSPLEDNLRNKDESPKREERGKCLEEL
VFGAVYKRDRRGNRSFSPQNRAITEPPPPCPAEELPILKKIAKRRMRNKLIPADFVKRPR
SEENEDSVMDDRPEMTEPQDDSPNEHPKDTEENKLIDLTGELNSNSSDKQGEELDELPDG
DNKDNEDVEDSPVFDVPLREPGRKSNKKMHGRWQGVDGDLQGKVKSENNEQKKPAKKKGE
NIKVEKSKAAKSLVLVGVGEGGSDPKIPKSRPSGQTEVQIESYPSSEDPGSPIMRRTRRS
RRLQLFTEEVQGSNKKIGTATSTKVVVLDSDCNKMQQSEEAKANTDRDNVTCLQNQNTEK
SVRKNGCVLDEEMGGIENLDSSEKRSCEMIEAQKVNPIEESIVEVPLTGIPCHADIACSV
TMVPSSISTPEASVSCAVPESVNQSNPVIKPFDDLRSNVPQETSASQAKCIDLEEDDRND
SELDTEQLVKSFKATKRKSFHLGSPNIKRSSFWSNKENTTLTKTQENKHVGTDMEAGNGQ
GFSRTTECPTVQQESEKRTIFEHSCCSDLSPPSSSPNNISQEKAQRNCKRLRKSILTRPP
QDLVESSNPDTNGKTQKQILSRLSGNSSKSALSPNKVTKSQMESPHQAVGSGLLFPAFSA
TKEDLPDPTPVASKQLRVPKGQQPYKVEGSMMKSPTELESSHSVGSETAVEPNKTWPENM
TGNMANTESSLTPDDLPIIQSVVIQEAERTKGSGVVSLHSPIKCTLKRRMAQRLESSSES
DCSGEEEELPSLAQIFRSSACPPTAEEEEEEESVTLLKDHARDQGSYGEAGDGTCAAAED
GQRESSPLMCPSPEWVTTSQVSVDLFGTPEEAEGMAGDTGLTQESSQFSSECIATQQKVA
MQEELRRLERMMALVSEALQEKEEEPTEAKVNPGAPYPPALLQPDRSTVSAGLDLQTTLP
CGQGTRKRSASRESAQNIGGNAASPPPGLGDCEGLGPTPTTPCRTQHEGPGGTGAGRLGR
QSGRSLRSSMRARPNQVSSVVRVRSGTNAPSAGLEVQDTPGVIQPANTHPSTHTPLREPA
GVKLVLVASGLSAPEQSMVKKFAKRMGGSVCSQVTSETTHVIMNTDGDLVCERTLKYFLG
IAGRKWVVSFQWISECFKQGTVLNETSFEVRGDVVNGHDHQGPMRARTTGDTSLLMKDYE
ICFQGPFTDMTTGQMEWMVELCGATVVQEPLLFTGELKTRQLIVVQPGSDQSPINYQALQ
RIATVITRGWLFDTVATYTLQSLDNYRT
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacttcagtagaacctcagttctttttgacaaattcagttgtgctgcacatgag
aaaatgaacaccatgaaatccccgaaggctgaagatgtcagacgggggatctctgtcatc
tgggagatcttgcagtgtccaatatgtttggaattgatgagcacacctgtgtctactaag
tgtgaccaccagttttgcaagttttgtataatgaagcttttggacagcagtaggagaaag
gaggccaactgtccagtttgtaagacaaagatcacaaaaaggagtttgcaggagagccct
gggtttcagaaattggcagagggattgcagaatatggtccaggcgtatgaacatgacacc
tgcacaaactacttcactggaatgtcccagatgaggagacatatgagtgtcacagagact
gtgcagaagaaaaacatccatgatgtctcatctgatgacgtgtgggctactgaccgtgct
gatggcgaggatcatgagtttccaatgtcctgctcgtcaactatagcagccaaggatggc
tttgcaaagctcatgggtcttgaagattcttgccctgtcatttcggacgaggggtttgac
agcggcctaggtgacatacctccagccactgaaaaggataccgatgactctaaagctacc
tccaccacagaaaaacggaaggcagcattagaggcagaaatacctaaggttgttgaaaga
gctccttcacgaccccaaaagcttgggaaaaagataaccactcatcctcaagatccacca
tgccgtcctgaaaaggtcggaaaccaacctgtcagacgatcttcgaggaataacaaaaga
gagtccttgaccgaaatgattgaccagaatcagaagaaaagtctagagaaagtctctgag
tggctcatgaataattcctcaacagaagtaaactctgagaaggagaaaaacacagagggc
tccgatgactcagtttctttggcaggaagttgttccgcctcctcacccttagaggataac
ctcagaaataaggacgagagtccaaagagagaagagcgtggcaaatgtcttgaggagctg
gtatttggggctgtttacaaacgggatcgaagagggaaccgcagtttttcaccacagaat
agagcgatcacagagcctccaccaccctgtccagctgaggaactcccgatcctgaagaag
attgccaaaaggaggatgagaaataaactgatacctgctgactttgtcaagagaccaaga
tctgaggagaatgaagacagtgttatggatgaccgaccagagatgacagaaccacaagat
gattctcccaatgaacaccctaaagatactgaagaaaataagttgattgacctgactggg
gagctgaattctaatagctctgacaagcaaggagaagagcttgatgagttgccagatggt
gacaacaaagacaatgaagatgtagaggacagtcctgtgtttgatgtgccactacgggaa
cctgggaggaagtcaaataaaaagatgcacggtaggtggcagggtgttgacggggattta
caagggaaagtaaagtctgagaataacgagcaaaaaaagcctgctaagaaaaaaggggaa
aacatcaaggtggagaagagcaaggcagccaaatccttagtccttgtgggtgtcggagag
ggtggaagtgaccctaagatacctaagagcagaccgtcaggccagaccgaggttcagatt
gagagttaccctagcagtgaggacccaggaagcccgatcatgaggagaaccaggaggagt
cggaggcttcagctcttcacagaggaagtacaagggagtaacaagaagatcggcactgca
acatccacaaaggttgttgttcttgattcagactgcaacaagatgcagcaatcagaggag
gcgaaagccaacactgacagggataatgtgacttgtttgcagaaccaaaatacagaaaag
tctgtaaggaaaaacggatgtgttttagatgaagaaatgggaggtattgagaacttggac
tctagcgagaaaagatcctgtgaaatgattgaggcacagaaagtgaacccaattgaggag
tctattgttgaagtcccacttacaggaattccttgtcatgctgatattgcttgttcagtg
actatggtaccaagttcaattagtaccccagaggcaagtgtctcatgtgccgtgcctgag
agtgtaaaccaaagtaatccggttatcaaaccattcgatgacttgagatcaaatgtacca
caagagacgtcagccagccaggccaaatgcattgatctggaggaggatgacaggaatgac
agtgagctggacactgagcaactggtgaagagcttcaaagccaccaaaaggaagtccttc
caccttggtagtccaaatatcaagaggagttccttctggtccaacaaggaaaatacaact
cttacaaagactcaagagaacaaacatgtcggcacagatatggaagcaggaaatgggcag
ggattttcaaggacaacggagtgtcccacagtccaacaggaatctgagaaaaggacaata
tttgaacattcttgctgtagtgatttgagcccaccttcaagttcccccaacaatatttca
caagaaaaagcacagaggaattgtaaaaggctcagaaaatccattcttaccagaccacct
caggatttagtggagtcttcgaaccctgataccaatgggaagacccagaaacagattctg
tccaggctttctggcaacagctcaaaaagtgccctcagtcccaacaaagtcacaaaaagc
caaatggaatctccccaccaagctgtgggttctggtctgctctttccagcttttagcgcc
actaaggaagatctaccagatccgacacctgtagcttcaaagcaacttagagttcctaaa
ggtcagcagccatacaaagtggagggcagcatgatgaaaagtccaacagaactggagagt
agccacagtgttggatcagagacggcagtggagccaaacaaaacgtggccagagaacatg
actggaaacatggccaatacagagtcctccttaactccagatgaccttccaattatccaa
tcagtagttatccaagaggcagagaggactaaaggaagtggtgtggtcagcttgcactct
cccatcaagtgcaccctaaagcggaggatggctcagagactggagtcttcctcggagtct
gactgcagtggagaggaagaggaactgccttcccttgcacaaattttcagatcttcggct
tgtccaccaaccgctgaggaggaggaggaggaggaatccgtcacattgctcaaagaccat
gccagggaccaaggaagctacggggaggctggtgatggtacctgtgctgcagctgaagat
gggcagcgagagagcagtcctctcatgtgccccagtcccgaatgggtcaccaccagtcag
gtatctgtggacctgtttggaacaccagaagaagctgaaggaatggcaggtgacactggc
ctgacacaggaatcatcacaattttcaagcgagtgtattgccactcagcaaaaggttgcg
atgcaggaggagctgcgaaggctggagagaatgatggcgttggtgtctgaagcgctccag
gagaaggaggaggagcctactgaggccaaagttaaccccggggccccatatcccccagcg
ctgcttcaaccagacaggtccacagtctccgcaggccttgatctccagacgaccctgccg
tgtggccagggcaccaggaagagatctgccagcagggaaagtgcccaaaacattggggga
aatgcagcctcaccgccccctggtcttggagactgtgagggccttgggcccacccccacc
acgccctgccgcacccaacatgagggacctggagggactggggcggggcggcttggcaga
cagtcaggacggagcctaaggagcagcatgagagcgaggcccaaccaggtgtcgtcagtg
gtcagagtgcgcagcgggaccaatgctccctcagctgggctggaggtccaggataccccg
ggggtcatccagcctgccaacacacacccatcaacacacactccactgcgggaacccgct
ggggtcaagttggtgctggtagcatcaggactcagtgcacctgaacagtcgatggtgaaa
aagtttgccaagaggatgggaggcagtgtgtgttcacaagtgacgtccgagaccacccat
gtcatcatgaacacagatggtgatctggtgtgtgagcgcacgctcaagtacttcctgggc
atcgcaggcaggaagtgggtggtgagcttccagtggatttccgagtgcttcaaacaaggg
acagtcttaaatgagacgtcatttgaggtgcgaggagacgttgtgaacggacatgatcac
caagggcccatgagagcacggaccacaggggacacaagtctgctgatgaaggattacgag
atctgtttccaaggccctttcaccgatatgaccactggtcagatggagtggatggtggag
ctttgcggcgcaacggtggtccaagagccacttctcttcacgggtgaactgaaaactcgt
cagctaatagtggtacaaccaggctcggaccaatcaccaataaactaccaagccctccag
aggatagccacggtcattacccgtggttggctatttgataccgtggcaacctacaccctt
caaagcctcgacaactacagaacgtaa
DBGET
integrated database retrieval system
