KEGG   Salmo salar (Atlantic salmon): 106592035
Entry
106592035         CDS       T04363                                 
Name
(RefSeq) TNF receptor-associated factor 6-like
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04010  MAPK signaling pathway
sasa04120  Ubiquitin mediated proteolysis
sasa04140  Autophagy - animal
sasa04144  Endocytosis
sasa04620  Toll-like receptor signaling pathway
sasa04621  NOD-like receptor signaling pathway
sasa04622  RIG-I-like receptor signaling pathway
sasa05132  Salmonella infection
sasa05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    106592035
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    106592035
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    106592035
   04140 Autophagy - animal
    106592035
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    106592035
   04621 NOD-like receptor signaling pathway
    106592035
   04622 RIG-I-like receptor signaling pathway
    106592035
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    106592035
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    106592035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sasa04131]
    106592035
   04121 Ubiquitin system [BR:sasa04121]
    106592035
Enzymes [BR:sasa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106592035
Membrane trafficking [BR:sasa04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    106592035
Ubiquitin system [BR:sasa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    106592035
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF zf-TRAF_2 Phage_GP20 DUF6779 Sina_ZnF ATG16
Other DBs
NCBI-GeneID: 106592035
NCBI-ProteinID: XP_014038807
UniProt: A0A1S3QGA9
LinkDB
Position
Un
AA seq 343 aa
IHESLCPFANVVCQYCGMELIRDQLESHYDTDCPKAPIACTFSTFGCREMMQRNDLAQHM
QEFTQMHMRCMAEYLHRHSLTGYTQPPPSENRGAAAAEQGAQAGASSSGAPCQCCGELQT
MRETTQQLEGRLVRQDHQLRELSIQAGLVAELRRKVTSLEENLKELEAKQCQGVYVWPLE
GFSGYLRTQAAGQPVVVHSPGFYTGRPGYKLCLRLHLQTPSAQRCSNYISLFVHTMQGEF
DGQLSWPFQGTIRLAVLDQGPEGQHHVEVMETKPDLQAFQRPTIQRNPKGFGYVTFLHLM
ELQQRGFVHDDTLLVRCEVTPRFDTALRREGAAMHPRGPEASL
NT seq 1032 nt   +upstreamnt  +downstreamnt
attcatgagtcgctgtgtccctttgccaacgtggtgtgtcagtactgcggtatggagctc
atcagagaccagttggaatctcactatgacacagactgtccgaaggctccgatcgcctgt
accttcagcacttttggatgtcgagagatgatgcagcgcaatgacctggcgcagcacatg
caggagttcactcagatgcacatgcgctgcatggctgagtacctgcacaggcacagcctt
accgggtacacccagccaccaccttctgagaaccgaggggctgccgctgcagagcagggg
gcacaagcaggagctagcagcagtggcgccccctgccagtgctgcggggaactgcagacc
atgcgggagaccacccagcagctggagggccgtctagtgcggcaggaccaccagctacgt
gagctgagcattcaggcgggcctggtggcagagctccgtcgtaaggtcacttcgctggag
gagaacctaaaggagctggaggccaagcagtgccagggcgtgtacgtgtggcccttggag
ggcttctcaggctacctgcgtacccaggctgccggacagcccgttgtggtgcacagccca
ggcttctacacgggccggccgggctacaagctgtgtctgcgcctccacctccaaacgccc
tcggcccagcgctgctccaactacatctcactgtttgttcacaccatgcagggtgaattt
gatgggcagctgtcgtggcccttccaaggcaccatccggctggccgtgctggaccaaggg
cctgagggccagcaccatgtggaggtgatggagaccaagcctgacctgcaggccttccag
aggcccaccatccagaggaaccccaagggctttggctacgtcaccttcctgcacctgatg
gagctgcagcagcgggggtttgtgcacgacgatacgctgctggtgcgctgtgaggtgacg
ccgcgcttcgacaccgccctaaggcgcgagggggcggccatgcatcccagagggcccgag
gcctcgctgtga

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