Sphaerochaeta associata: MUG09_15580
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Entry
MUG09_15580 CDS
T08141
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sass
Sphaerochaeta associata
Pathway
sass03030
DNA replication
sass03410
Base excision repair
sass03420
Nucleotide excision repair
sass03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sass00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MUG09_15580 (ligA)
03410 Base excision repair
MUG09_15580 (ligA)
03420 Nucleotide excision repair
MUG09_15580 (ligA)
03430 Mismatch repair
MUG09_15580 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sass03032
]
MUG09_15580 (ligA)
03400 DNA repair and recombination proteins [BR:
sass03400
]
MUG09_15580 (ligA)
Enzymes [BR:
sass01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MUG09_15580 (ligA)
DNA replication proteins [BR:
sass03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MUG09_15580 (ligA)
DNA repair and recombination proteins [BR:
sass03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MUG09_15580 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MUG09_15580 (ligA)
MMR (mismatch excision repair)
DNA ligase
MUG09_15580 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MUG09_15580 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
BRCT
PTCB-BRCT
Nlig-Ia
HHH_2
DNA_ligase_ZBD
RNA_ligase
DUF4796_N
Nop10p
Motif
Other DBs
NCBI-ProteinID:
UOM50977
LinkDB
All DBs
Position
complement(3357819..3359909)
Genome browser
AA seq
696 aa
AA seq
DB search
MNELEQEIHTLSEQLAAYQKAYYVDNRPLVSDLEYDRLFDRLVALEAKHPHLKRADSPTQ
RVGSDLDSTLGEVAHTIPVLSLDKAYGDGELLAWIEKTEAKIGEDVGIVIEEKIDGISIV
LYYEDGLLVRAVTRGNGMVGNDVTANVKTIASIPLRLPTEANLAVRGEIYLPKANFATLN
ASLEVPFANPRNLAAGTIRRIKSSEVAKVPLQIFVYEGFSKDVVQSDHLQILSTLASYGF
RLNPNLGYFAKDGVQARQALEAAGLSGFGGSFSDLASYIQEHTLKRSSLDYEIDGLVAKV
NSVSAREMLGYTGHHPRWALAYKFESPQAQTVLQSIDVQVGRTGRVTPVARVTPVQVAGS
TISNITLHNQDYINMLELGIGDTVEISRRGDVIPAVERVIEKNEASEGTYTMPSQCPVCN
SVLQVHGAHTFCPNIACPAQVRGRIEFFIGKDGMDIESFGPETASVLIEMGYLKDVDDIY
RIDYRKALAEQAGFGEKKIRLIEQGVQKSKSQPFRKVLVALGLPELGKKGAELLITHGIT
SMDALLDIAKRNDVERLTSIKQIGQKSANLYIEALSDPAMQQRIARLADVGLAMEERDQQ
MQKLDDSFSGQVWCVTGSFEHFNPRSLAMEEVTKRGGRTVSSVTGKTTHLLAGAGGGSKL
ESARALGVTVVDEETFLAMLKTNAGGEDQKQGEFVF
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaacttgaacaagaaatccataccctttccgagcagcttgccgcctatcagaaa
gcctactatgtggacaaccgtcccttggtcagtgatttggagtacgaccggcttttcgac
cgtttggttgccttggaggcaaaacatccccacctaaagcgtgccgactctccgacccaa
cgggtgggaagcgacctcgactcgaccctcggcgaagttgcgcataccattccggtgctc
agcctggataaggcgtacggtgatggggagctgctcgcctggattgagaagaccgaggcg
aaaatcggcgaggatgtggggattgtcatcgaggaaaaaatcgacggaatttcgattgta
ctctactatgaggatggactgcttgtccgggcggtgacacggggcaacggcatggtgggc
aatgatgtgacggccaacgtcaagaccatagcatccataccgctcagacttccgaccgaa
gcgaatctggctgtccgaggagaaatctaccttcccaaggcgaactttgccacattgaat
gcgagcttggaagttccttttgcgaatccccgcaatcttgcagcgggaacaatccgaagg
atcaagagcagcgaagtggccaaggtccctcttcagatttttgtctacgaggggttctcc
aaggatgtggtgcagagcgaccatctgcagattctctcaacacttgcttcctatggattc
aggctcaatccgaatcttggatactttgccaaggatggcgtgcaggcaaggcaggctctt
gaggctgccggactttccggcttcggtggaagtttctccgaccttgcttcctatatccag
gagcataccctaaagcgatcctccctggactacgagatcgacggcttggttgccaaggtg
aactcggtgtcggcaagggagatgctgggctacaccggccatcacccacgatgggcattg
gcctataagttcgagtccccccaggcgcagaccgtccttcagtccatcgatgtgcaggtg
gggcgaacgggaagggtcaccccggtcgcccgggtgacgccggtacaggtggctggttcg
acgatcagtaatatcaccttgcacaaccaggactacatcaacatgctcgagctgggaatc
ggggacacggtggagatatcacgacgcggggatgtcatcccggctgtggagcgcgtcatc
gagaagaacgaggcttctgaaggcacctatacaatgccttcacagtgcccggtctgcaac
agtgttctgcaagtgcacggtgcccataccttctgcccgaacatcgcctgccccgcccag
gtgaggggccgcatcgagtttttcatcggcaaggatgggatggacattgaaagcttcggt
cccgaaaccgcatcggtccttatagagatgggctacctgaaggacgtggatgatatatac
cgcatcgattatcgtaaagctcttgcagagcaggcgggcttcggggagaagaaaatccgc
ctgatcgagcagggtgtacagaagagcaagtcccaaccgtttcgcaaggtcttggttgcg
cttggccttcccgagctgggcaaaaaaggtgctgagctgctgatcacgcatggtattacc
agcatggatgctctactcgatattgcaaagcgcaatgatgtcgagcggcttacctcaatc
aagcagatcggtcaaaagagtgcaaatctctacatcgaagccttgagcgaccccgccatg
cagcaaagaattgcccgtcttgcggacgtaggccttgcgatggaggagagagatcagcag
atgcaaaagctcgacgacagcttctcgggccaggtttggtgtgtgaccggttcttttgag
cacttcaatccccgatcccttgccatggaggaagtaaccaagcgggggggacggaccgta
agctctgttaccggaaaaaccacgcatctgcttgcaggagcaggaggcgggagcaaattg
gagagcgcccgggcgctgggggtgacggtggtcgacgaagagacctttctcgccatgctg
aaaacaaacgcgggcggagaggatcagaagcagggagaatttgttttttag
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