Syntrophus aciditrophicus: SYN_02935
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Entry
SYN_02935 CDS
T00346
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03030
DNA replication
sat03410
Base excision repair
sat03420
Nucleotide excision repair
sat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SYN_02935
03410 Base excision repair
SYN_02935
03420 Nucleotide excision repair
SYN_02935
03430 Mismatch repair
SYN_02935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sat03032
]
SYN_02935
03400 DNA repair and recombination proteins [BR:
sat03400
]
SYN_02935
Enzymes [BR:
sat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SYN_02935
DNA replication proteins [BR:
sat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SYN_02935
DNA repair and recombination proteins [BR:
sat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SYN_02935
NER (nucleotide excision repair)
GGR (global genome repair) factors
SYN_02935
MMR (mismatch excision repair)
DNA ligase
SYN_02935
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SYN_02935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
APG6
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ABC77444
UniProt:
Q2LTN8
LinkDB
All DBs
Position
complement(1616333..1618351)
Genome browser
AA seq
672 aa
AA seq
DB search
MMDAESARKNIEDLKARIEYHNRRYYQLDDPEISDAEYDSLLQELIALEKQFPQWLTEDS
PSRRIGAAPLSKFAPAVHLSPMLSLANAFSEEEILEFDRRLKRFLDSSERLSFVVEPKID
GVAVNLIYSSGVLTTGATRGDGAKGEDVTQNIRTLHTIPLKIQNGSDERLPEQIEIRGEI
YMETAAFRKLNERRLAAGEPPFANPRNAAAGSLRQLDASITARRPLKMFCYAVGIVRGRA
FTYHHDVLHALKKWGFSVNPFIRQVEGIEKCIEFYRELQDLRNELPYEIDGMVIKVDDLS
LQTRLGAVSRSPRWAVACKFAATQATTVIRDIIVNVGRTGTLTPVALMTPVKVGGVTVSR
ATLHNQDEIDKKDIRIGDTVLVQRAGDVIPEVVKVIVSNRSGREIPFKIPDTCPECGSEV
VRLAGEAAHRCIGLSCPAQLRRHIQHFVSRGGMDIEGLGDKLVSQLVNQKLIHDPADLYY
LSHDALLNLERMAEKSVSNLLSAIELSKHPSLDKIIFALGIRHVGEHISKILARRFRTLD
ALINTTENELLAIRDIGPEVSSSILEFFRNASNRRVIEKLKKAGVSPLETISPRSAPLTG
KTFVFTGALSRMTRDEAKQIVESLGGQAAGTVTKKTDYVVAGEAAGSKLQKAQKAGIAIL
SEEEFLRLAGKI
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgccgaaagcgcccgcaaaaatattgaagatctgaaagcccggatcgaatat
cataatcgacgctattatcaactggatgacccggaaatctccgatgcggaatacgactcc
ctgctccaggaactgattgcccttgaaaagcagtttcctcaatggctgacggaagattct
cccagccggcggatcggcgccgcccccttgagcaagtttgccccggctgttcatctgtct
cccatgctgagtctggccaatgccttttctgaagaagaaattctggaatttgacaggcgt
ttaaagcgctttctggacagttcggaaaggctttcctttgttgtagaacccaagattgac
ggtgttgccgttaatctgatttacagcagcggcgtcttgacaacaggtgcaacccgtggg
gatggcgccaaaggtgaagatgtcactcaaaacattcgcactcttcatacaatccccctg
aaaatccagaacggctctgatgaacggctgcctgaacagatcgagatccgcggtgaaatc
tacatggaaacggcggcttttcgaaagctcaatgaacgaaggctggccgcgggtgaaccc
cctttcgccaatcccagaaacgccgctgccggatctctgcgacagcttgatgcctccatt
accgcgagaagacccctgaagatgttctgttacgctgtagggattgtgagaggacgggcc
ttcacgtatcaccacgatgtgctgcatgccctcaagaaatggggattttccgttaatcca
tttatccgtcaggttgaaggcattgagaagtgcattgaattttaccgcgagcttcaggac
ctgagaaatgaactgccttatgaaattgacgggatggtaatcaaggtagacgatctgtcc
cttcagactcgtcttggcgcggtatcccgcagtccgcgctgggcggtggcctgcaagttc
gccgcgacgcaggcgacgacagtgatcagggacattatcgtcaatgtgggaaggactggt
actttgacccctgttgccctcatgacccctgtgaaagtgggcggggtcaccgtcagccgg
gccacacttcacaatcaggacgaaatcgacaagaaggatatccgcattggagatactgtt
cttgttcagcgggcgggagatgtcatccctgaagtcgtcaaggttatcgtatcaaatcga
tccggcagggagataccttttaaaattcctgatacatgcccggaatgcggctcggaggtc
gtccgcctcgccggagaggctgcccatcgctgcatcggtctgtcctgtccagcccagctt
cggaggcatattcaacattttgtatcccgaggcggaatggatatcgaaggactgggagac
aaactggtttctcagttagtcaatcagaagcttattcatgacccggcggatctctattat
ctgagccatgacgcgcttctgaatctcgagcggatggcggaaaaatcagtatccaatctt
ttgtccgccatcgaactgtcaaagcacccctcacttgacaagatcatttttgcccttgga
atccgtcatgtgggggagcatatatccaaaattctcgcccgtcgatttcgtactctggat
gctctgataaacacaacggaaaacgaacttcttgcgatccgggatatcggacccgaagtc
agcagcagcattttagaatttttccgcaatgcttcgaatcggcgcgtgattgaaaaactt
aaaaaagccggtgtcagtcctctggagacaatttccccgcgctctgccccgctgacagga
aagaccttcgtctttacgggtgccctgagcagaatgacccgggatgaagcaaagcagatt
gtcgaatcactgggcggtcaggcggcgggtaccgtgactaaaaaaacagattatgtggtg
gccggcgaggccgcgggctccaaacttcagaaggcgcagaaagcaggcatcgccattctg
agcgaggaagaatttctgagattggcaggcaaaatataa
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