Sylvia atricapilla (blackcap): 136357718
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Entry
136357718 CDS
T10263
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
136357718 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sati03021
]
136357718 (SMARCC1)
03036 Chromosome and associated proteins [BR:
sati03036
]
136357718 (SMARCC1)
Transcription machinery [BR:
sati03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
136357718 (SMARCC1)
Chromosome and associated proteins [BR:
sati03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
136357718 (SMARCC1)
PBAF complex
136357718 (SMARCC1)
GBAF(ncBAF) complex
136357718 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
136357718
NCBI-ProteinID:
XP_066169339
LinkDB
All DBs
Position
1:complement(534295..601061)
Genome browser
AA seq
1102 aa
AA seq
DB search
MRGAGRAGTMAAAALAAGGGPGSGPAAAPAGGPGPALAAARRKDGGPAGKFWESPDTVSQ
LDSVRVWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMD
FKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLSRPTIY
LIPDMELKLANKLKDIVKRHQGTVTEEKSKATHHVYPSPTSMDDDEWLRPVMKKDKQVLV
HWGFFPDSYDTWVHTNEIDAEIEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENR
KSVSFRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPVESRKKTGKKGQAALY
GKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQD
EETVATGGKEDEDPNKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALP
EFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQW
GLINYQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHIRTPQVPAAQQMLNFPEKNKEK
PTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSR
TQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAS
AAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPDK
MEGAEEEKMETEAEGQPAEKVESKAESEAEEGEKVPEGEPERSAEKEPDSEGAAEPKTEE
KEAEENKENVDGSKDKEAEAGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKI
KSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAEL
RARQQMEQQHSQNPQQPHQHPSGPGMNPLGAPAHPGLLPHQQPPPYPMMHHQMPPPHPPQ
PGQMPGPGSMIPGQPLPGRMMATSIHPGSGAAPPGMAPMSGNLLGPRVPLAAPNGMYAGP
AQPPAEGVTPPPAGATPASAAP
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcgcggggcgcgcggggacaatggcggcggcggcgctggcggcgggcggaggc
cccgggagcggccccgcggcggctccggcgggcgggcccggccccgcgctggccgcggcg
cgccgcaaggacggcggccccgccggcaagttctgggagagccccgacaccgtgtcccag
ctcgactcggtccgcgtgtggctggggaagcactacaagaagtacgttcaagcagatgct
cctaccaataaaaccttggctgggctggtggtgcagctgctgcaattccaggaagatgcc
tttggaaaacacgtcaccaatcctgccttcacaaagcttcctgcaaagtgcttcatggat
ttcaaagctggaggtacattatgtcacattcttggtgctgcttacaaatataagaacgaa
cagggctggaggaggtttgacctgcagaacccctcgcggatggatcggaacgtggagatg
ttcatgaacattgagaaaacactggtgcagaacaactgtctgagcagaccaaccatctac
ctcattcctgacatggagctgaagctggccaacaagctgaaggacattgtcaaacgtcac
cagggaacagtcactgaggagaaatccaaggctacccaccatgtgtatccaagtcctacc
tcaatggatgatgatgagtggttgagacctgtaatgaaaaaggacaagcaggtgctggtg
cattggggcttttttccagacagctatgacacctgggtccacaccaacgagatcgatgcg
gagatcgaggatcccccgattcctgagaagccctggaaggttcatgccaagtggattttg
gacactgatgtgttcaacgagtggatgaatgaagaggattatgaggtggatgagaacagg
aaatccgtgagttttcgccagaggatctccatgaagaatgaggagcccgtgcggagcccc
gagaggagggacaggaaagcagcagccagtacaaggaaaaggaaacactccccttctcca
ccccccactcctgtggagtccaggaaaaagacagggaagaaaggacaagcagctctctat
gggaaaaggagggggcagaaggaagaggatgagcaggaggatctcaccaaggacatggag
gatcccaccccagtacccaacatagaagaagtggtacttcccaaaaatgtgaacccaaag
aaggacagtgagaacacgcccgtgaagggaggaaccgtggcagacctggatgagcaggat
gaggagacagtggcgactggagggaaggaggacgaggaccccaacaagggtgaccagagc
cgctccattgaccctggggaggacaatgtcaccgagcagaccaaccacatcatcatcccc
agctacgcctcctggttcgactacaactgtatccacgtgatcgaacgtcgtgcgcttcca
gaattcttcaacgggaaaaacaagtccaagactccagaaatatacctggcctacaggaac
ttcatgatcgacacgtaccggctgaacccgcaggagtacctgaccagcactgcctgcagg
aggaacctcactggggacgtctgtgctgtcatgagggtccacgctttcctggagcagtgg
gggctcatcaactaccaggtggaccccgagagccgccccatggccatggggccgcccccg
accccccacttcaacgtgctggccgacaccccctcggggctgatgccactgcacatccgc
accccgcaggtcccagctgcccagcagatgctgaacttccctgagaaaaacaaggagaag
ccaactgacctgcagaactttggccttcgcacagacatttactccaaaaagactttggcc
aagagtaaaggtgcaagtgctggcagagaatggacagagcaggagacactgctgctgtta
gaggcgctggagatgtacaaggacgactggaacaaggtgtcggagcacgtgggcagccgc
acgcaggacgagtgcatcctgcacttcctgcgcctgcccatcgaggacccctacctggag
aactcggacgcgtccctggggcccctggcctaccagcccgtgcccttcagccagtccggc
aaccccgtcatgagcaccgtggccttcctggcctccgtggtggacccacgcgtggcctcg
gccgccgccaaggctgccctggaggagttctcccgggtcagagaggaggtgcccctggag
ctggtggaagcccacgtgaagaaggtgcaggaggcagctcgagcctctggaaaggtggat
ccaacctacggcctggagagcagctgcatcgccggcaccggccccgacgagcccgacaag
atggagggagctgaggaagagaagatggaaacggaggcggaggggcagccagcagagaag
gtggagagcaaagccgagagtgaggctgaggagggagagaaggtcccagaaggagaaccc
gagcggagcgcggagaaggagcccgacagcgaaggggctgcagagcccaagacagaggaa
aaggaggcagaggagaacaaggagaacgttgatggcagcaaagacaaagaggctgaggct
gggaagaagaaagtggaacacgagatctcagaaggaaacgtggccacagctgcagctgct
gccctggcctctgctgccaccaaagccaagcacctggcagctgtggaggagaggaagatc
aagtccctggtggcccttctggtggagactcagatgaagaagctggagataaaacttcgc
cactttgaggagctggagaccatcatggacagggagaaagaggcactggagcagcagagg
cagcagctcctcaccgagaggcagaacttccacatggagcagctcaaatacgccgagcta
agggctcgccagcaaatggagcagcagcacagccagaacccccagcagccccaccagcac
cccagcgggcctggcatgaaccccctgggggcaccagcacacccagggctgctgccccac
cagcagcccccgccctaccccatgatgcaccaccagatgccacctcctcacccacctcag
ccaggtcagatgcccgggcctggctccatgatcccggggcagcccctgccaggccggatg
atggccaccagcatccaccccgggagcggggcggctccacccgggatggccccgatgtcc
gggaacctgctggggccccgcgtgccgctggctgctcccaacggaatgtatgccggcccg
gcgcagccacccgcagaaggagtgaccccacctccggccggcgccacgcccgcctccgcc
gcgccctga
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integrated database retrieval system
