Sylvia atricapilla (blackcap): 136358235
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Entry
136358235 CDS
T10263
Symbol
NUP98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03013
Nucleocytoplasmic transport
sati05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136358235 (NUP98)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
136358235 (NUP98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sati03019
]
136358235 (NUP98)
03036 Chromosome and associated proteins [BR:
sati03036
]
136358235 (NUP98)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
136358235 (NUP98)
Chromosome and associated proteins [BR:
sati03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
136358235 (NUP98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
136358235
NCBI-ProteinID:
XP_066170288
LinkDB
All DBs
Position
2:114850964..114890503
Genome browser
AA seq
1840 aa
AA seq
DB search
MFNKSFGTPFGGSTGFGTTSTFGQNAGFGTSSGGAFGTSAFGSNNNSGSLFGSTQTKPGG
LFGSTTFNQPATSSTSTGFGFGTSTGTSNSLFGTTSTGGSLFSSQNNAFAQNKPAGFGNF
GTSTSSGGLFGTTNTTSNPFGSTSGSLFGPTSFTAAPTGTTIKFNPPTGTDTMVKSGVST
NINTKHQCITAMKEYESKSLEELRLEDYQANRKGPTNPVGAGATAGLFGSSTATSSTATG
LFGSSTTNTGFSYGQNKTAFGTSTTGFGTGTTGGLFGQQSQTTSLFNKPFGQATTTQNTG
FSFGGTSTLGQPNTNTMGLFGVTQPSQPGGLFGTAANTNAGTGFGTGTGLFGQANTGFGV
GGSTLFGNKPAGFGATTTSAPSFGTTTGGGLFGFGANTAGNSLFGNKPATGTLGTGLGTG
FGTALGAGQTSLFGNTQPKLGGTLGTGAFGAPGFNTSTATLGFGAPQPAVALTDPNASAA
QQAVLQQHLNSLAYSPFGDSPLFRNPMSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRP
ATRVRPKALQSAGSAKSQLFDGLDDDEPSLSNGAFMPKKSIKKLVLKNLSSSNLFSPVSR
ENEDLASPSEYPENGDRFFLSVPPEENHRQDGEREEEEEAHEVTRFYTNPIAKPIPQTLE
GSGHKAAAVDDTIVALNMRAALRNGLEGSSEDASFQEDSLQEEWDKEAEPGHQLHPAGIV
LTRAGYYTIPSLEELARLTNDRKECIVTDFTIGRRGYGSIYFEGEVNLTNLNLDEIVHIR
RKEVIVYPDDEKKPPIGEGLNRRAEVTLDGVWPTDKTSRCLIKSPERLAEMNYEGRLEAV
SRKQGARFKEYRPETGSWVFKVAHFSKYGLQDSDEEEEDHPSKADTKKLKTTPVPPPGHL
LPQQMALNGKPAPPAQPLELEQLGRVVELDSDMADITQEAAQEPLAEELAEEQEAVPAST
HIASSQGINPYVLQIMKASLLADDDDLDLILDYPGKPLVKMDTSQEICSPRLPISRSQGQ
KRHSAAGLLQSKFSSVLLQGAGGGGAVADTKVPRATGSPPGAAPWALSPLAPAFSVPAAL
PEAPVRTVGARRQRRLVPLERSITYGKGKLLMDMGLFMGRSFRVGWGPDWTLVNCGDQLS
GSREVEDAPVEPVEYGFLPTPVAPKSLTESPFKVHVEKLSLEQWKMDRDKELYLTPLEIK
LKHSTVHMDEACPLLAPNPGVSAIHDYADWARKASEDPTVAESVVKHWCLAWTLCEAIWG
QLKELEASLEEPSEYVLALERRRAFSRWLSETAAARIEDEVSLCRHGSHVEAVFSCLTGK
RIGEACRLAQQAGDHRLALLLSQLAGSQPVRDLLTLQLVDWHRLHSDRFIQEERLRLFAL
LAGKPVWQLSERISVNVCSLLDWKRCVAVHLWYLLPPTASISKALAMYESAFQNTSECEK
YACCPLPPYLEDSGCVIEEDDNGGRPLRDVCFHLLKLYSDRSYELDQLLDPRSITSDPLD
FRLSWHLWEVLRALNYSHLSQQSWGVLNTSYAAQLESEGLWEWAVFVMLHEPDTLRREKA
VRELLSRHCALAESPESWAKESFLTQRLCLPPRWIHEAKAVRARMEGDKHKEALFLFKAG
HWNQCHKLVVRHLASDAIINENYKYLKGFLEDLAPPERSALIQDWELAGLVYLDYIRVNE
MLDRIQQLDVSTYELERLHTKVTSLCNRIEQLQCHNAKDRLAQSGMVTPLSSSSLGQPLP
RLGCTCIPDSDSFGLEKAFQIESSHSPAVPRPVLIHVPKCHIHTAVKSLQGWESTISLGS
SARVAEPCLGRNSLSIHPEPPLGQPEAVPSAPVPVPESRA
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaatccttcggaactccattcggaggcagcaccggctttgggacaacttca
actttcgggcaaaatgccggcttcggtacgagcagcggcggggccttcgggacgtcggcc
ttcggctccaacaacaacagcggcagcctcttcgggagcacacagaccaagccaggaggg
ttgtttgggtcaaccacgttcaaccaaccagccacctcctccaccagcactggctttggg
tttggaacatccactgggacatcaaacagcctcttcggaaccaccagcactggtggaagc
ctcttctcatcccagaataatgcctttgcacagaacaaaccggctggctttggaaacttt
ggtacgagcaccagcagtggagggctctttgggaccaccaacaccacttccaaccccttt
gggagcacatctggctctctctttggtccaaccagcttcactgctgctccaactggcacg
actattaaatttaatcccccaaccggcacggacaccatggtgaaatctggcgtcagcacc
aacatcaacaccaagcaccagtgcatcactgccatgaaggagtacgagagcaagtccctc
gaggaactccgcttggaagactaccaggcaaacaggaaagggcccacgaatcctgtagga
gcaggagcaactgctggcttgtttggctcttccactgccacatccagcacagccacagga
ctttttggctcttccacaaccaatacaggcttttcctatggacagaataaaactgctttt
ggaaccagtacgaccggcttcggcacgggcaccaccgggggcctctttgggcagcagtca
cagaccacgagcctcttcaacaaaccctttggccaggccaccaccacgcagaacaccggc
ttctccttcgggggcaccagcaccctgggccagcccaacaccaacaccatgggtctcttt
ggggtcacccagccctcgcagcctggaggcctttttgggacagctgccaatacaaatgct
gggactggatttggaacgggaactggcctttttggacaagccaatacaggatttggtgtt
ggtggttcgaccctgtttgggaacaagcctgctggatttggagccaccacgaccagcgct
ccctccttcggtaccaccacgggcgggggcctcttcggttttggtgccaacactgctgga
aacagcttgtttggaaacaagcctgcaactgggactctgggcactggactgggaacaggc
tttggaacagctctgggggcaggacagacgtccttgtttggaaacacccagccaaagctg
gggggaaccctgggaacaggagcgtttggagccccaggattcaacacatccacagccacc
ctgggcttcggggccccccagcctgctgtagctctgacagaccccaatgcctctgcagcc
cagcaggctgtcctccagcagcacctcaacagcctggcctactcccccttcggggactcc
ccactcttcagaaaccccatgtcagaccccaagaagaaggaagagaggctgaagcccacc
aacccagcagcccagaaggcactgacaacgcccacccactacaagctgaccccgcgcccg
gccaccagagtgcggcccaaggccctgcagtcggcgggctcggccaagtcacagctcttt
gatgggctggatgatgatgagccctccttgtccaacggagccttcatgccaaagaagagc
atcaagaagctggttctgaagaacctgagcagcagcaacctgttctctcctgtgagccga
gagaacgaggacctggcgtcgccctcggagtacccggagaatggggacaggttcttcctg
tcggtgcctcccgaggagaaccacaggcaggacggcgagcgggaggaggaggaggaggcc
cacgaggtgacgaggttttacaccaaccccatcgccaagcccatcccacagacgctggag
ggcagcgggcacaaggcggcggccgtggacgacaccatcgtggcgctcaacatgcgcgcg
gcgctgcgcaacggcctggagggcagcagcgaggacgcctccttccaggaggactccctg
caggaggagtgggacaaggaggccgagcccgggcaccagctgcaccctgcagggattgtc
ctgactcgagctggctattacaccattccgtccctggaggagctggcccggctgaccaac
gacaggaaggaatgtatcgtcacagacttcaccatcggccgcaggggttatggatcaatt
tactttgaaggagaagtaaatctaacaaacttaaacctggatgagatcgtacatatccgg
aggaaagaagttattgtttaccctgacgacgaaaaaaaacctcccattggggaagggtta
aataggcgggccgaggtcactctggacggggtgtggcccacggacaagacgtcgcggtgc
ctgatcaagagccccgagcgcctggcggagatgaactacgagggccggctggaggccgtg
tcccgcaagcagggcgcccgcttcaaggagtaccgccccgagaccggctcctgggtcttc
aaggtagcacacttctccaagtatggcttgcaagattcagacgaggaagaggaagatcat
ccttcaaaagcagacaccaagaagttaaagaccacacctgtgccacccccagggcacctg
ctgccccagcagatggccctgaacggcaaaccagcgcccccggctcagcccctggagctg
gagcagctgggcagggtggtggagctggacagcgacatggcagacatcacccaggaggca
gcccaggagcccctggccgaggagctggccgaggagcaggaggcagtgccagcgtccaca
cacatcgcatccagccagggcatcaacccctacgtgctgcagatcatgaaagcttccttg
cttgctgatgatgatgacctggatttgatcctggattatcctgggaagccacttgtcaag
atggacacttcccaagagatctgctccccaaggctccccatttcaagatcacaaggacag
aaaagacactcagctgccggcctgctgcagtccaagttctccagcgtcctgctgcagggc
gcgggtggcggcggcgctgtggcggacaccaaggtccccagggccacgggcagtcccccc
ggtgcggccccgtgggcgctgtccccgctggcccccgcgttctcggtgcccgccgccctg
cccgaggcgcccgtgcgcaccgtgggcgcccgccgccagcgccgcctcgtccccctcgag
aggtccatcacctacggcaaggggaagctgctcatggacatggggctcttcatgggacgc
tccttccgcgtcggctgggggcccgactggacgctggtcaactgtggggatcagctcagt
ggctccagggaagtggaggatgctccggttgagcccgtggaatacggcttcctgcccact
cccgtcgctcccaaatcactcacagaatccccttttaaagttcatgtggaaaagttgagt
ttggaacaatggaagatggatagagacaaagagctgtacctcacccctctggagataaag
ctgaagcacagcactgtccatatggatgaggcctgtcctctcctggcccccaaccccgga
gtctctgctatccatgactatgctgactgggccaggaaagcatctgaggatcccactgtg
gcagagagcgttgtgaagcactggtgcttggcgtggacgctgtgtgaggccatctggggc
cagctgaaggagctggaggccagcctggaggagcccagcgagtacgtgctggcgctggag
cggcgccgcgccttctcgcgctggctgtcggagacggcggccgcgcgcatcgaggacgag
gtgtccctgtgccgccacggcagccacgtcgaggccgtcttcagctgcctcacggggaag
aggattggtgaggcctgcaggctggcacagcaggcaggtgaccaccgtctggccctgctg
ctgtcacagctggccgggagccagcccgtgagggacctgctgaccctgcagctggtggac
tggcaccgcctgcacagcgaccgcttcatccaggaggagcggctgcgcctcttcgccctg
ctcgcggggaagccggtgtggcagctctccgagaggatcagcgtcaacgtgtgctcgctg
ctggactggaagcgctgcgtggccgtgcacctctggtacctgctgccccccacggcctcc
atctccaaggctctggccatgtacgagtcagcctttcagaacacctcagagtgtgaaaaa
tacgcttgctgtcctctgcctccttacctggaagattctgggtgtgtcattgaagaagat
gacaatggaggaaggcccctgagagacgtctgcttccatttgttgaagctctacagtgac
aggtcctatgagcttgaccagctgctggatcccaggagcatcacctctgacccgctggat
ttccgcctcagctggcacctgtgggaggtgctccgggccctgaactattcccacctgtcc
cagcagagctggggggtgctcaacaccagctatgctgcccagctggagagcgaggggctg
tgggagtgggctgtgttcgtgatgctgcacgagccggacacgctgcggcgggagaaggcc
gtgcgggagctgctgagccggcactgcgccctggccgagagccccgagtcctgggccaag
gagagcttcctgacacagcgcctctgcctgcccccacgctggatccacgaggccaaggcc
gtgcgggccaggatggagggcgacaagcacaaagaggccctcttcctcttcaaggctggc
cactggaaccagtgccacaagctggttgtcaggcacttggcctcagatgcaattatcaac
gagaactacaagtacctgaagggattcctggaggacctggcgccccccgagcgcagcgca
ctgatccaggactgggagctggcggggctggtctacctcgactacatccgtgtcaatgag
atgctggacaggattcagcagctggatgtttccacctacgagctggagcggttacacacc
aaagtgacatccctgtgcaacaggatagagcagctgcagtgccacaacgccaaggaccgc
ctggctcagtcaggtatggtgacacccctgtccagcagctccctgggacagccacttcca
cgcctgggctgcacctgtatcccagattcagattcatttgggttggaaaaggcctttcag
attgagtccagccattccccagcagtgccaaggccagtgctgatccatgtccccaagtgt
cacatccacacagctgtgaaatccctccagggatgggaatccaccatctccctgggcagc
tctgccagggttgcagagccctgtctgggaaggaattctctcagtatccaccctgagcct
cccctgggccagcctgaggctgttccctctgctcctgtccctgtccctgagagcagagcc
tga
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