KEGG   Sylvia atricapilla (blackcap): 136358384
Entry
136358384         CDS       T10263                                 
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
  KO
K08131  collagen type IX alpha
Organism
sati  Sylvia atricapilla (blackcap)
Pathway
sati04510  Focal adhesion
sati04512  ECM-receptor interaction
sati04518  Integrin signaling
sati04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sati00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    136358384 (COL9A1)
   04518 Integrin signaling
    136358384 (COL9A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    136358384 (COL9A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    136358384 (COL9A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:sati00535]
    136358384 (COL9A1)
Proteoglycans [BR:sati00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   136358384 (COL9A1)
SSDB
Motif
Pfam: Collagen Laminin_G_2 Laminin_G_3
Other DBs
NCBI-GeneID: 136358384
NCBI-ProteinID: XP_066170407
LinkDB
Position
3:complement(29014894..29076505)
AA seq 919 aa
MKSHWKITAFFYLCSFLWSFISATIQHQSRLPVILGASHRIDICPTIRIGQDDLPGFDLI
SQFQIEKAASQGIIERVVGSTSLQVAYKLGPNVDFRIPTSAIYSNGLPDEYSFLTTFRMT
GATLQKYWTIWQIQDSSGKEQVGVNLNGQMKSVEFSYKGADGKHQTASFLHLPFLFDSQW
HKLMIIVESNSVTLFIDCIKIESLNIKPKGKINTDGFAVLGKLKNNPQISVPFEIQWMVI
HCDPLRPQREGCGELPARVTQTGIERGPPGPPGPPGPPGPPGVPGIDGIDGERGPKGPPG
PPGPDGDAGKPGSPGLPGEPGADGFTGPDGSRGAPGLKGQKGEPGLPGARGLPGKGLLGP
PGPAGAAGLPGEVGRAGPPGDPGKRGPPGLPGPPGPPGTIGLQDGDVLCPSACPPGRPGH
AGLMGMKGQKGSKGESGEPGKQGYKGEEGDQGPSGEVGAQGPPGILGIRGITGIMGPKGT
KGARGLDGDPGPQGLPGAPGDQGQRGPLGEAGPKGERGPQGTRGINGLPGPKGEPGLPGV
DGREGIPGMPGAKGEPGKPGAPGDTGLQGLPGFPGSPGMKGIPGPKGNRGPPGVPGLMGN
PGKQGQQGPEGEAGPTGPRGPPGSRGETGPAGAPGLPGKLGPQGNIGLPGLPGPPGLPGG
KGDRGSVGEPGPKGEQGAPGAEGDGGEKGDLGDMGLPGAKGAVGNPGDPGSRGPEGSRGL
PGMEGPRGSPGPRGLPGEQGAPGLPGSEGPAGKEPSDQHIKQVCIRVMQEQLAQLAASLR
RPEFGAPGLPGRPGPPGAPGPAGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGEPGERGE
RGFPGRGLKGYPGPRGLPGEPGKASYGREGRDGDRGPPGVAGQPGVPGPPGPPGPPGYCE
PASCRVQAGQRAGKNMKGP
NT seq 2760 nt   +upstreamnt  +downstreamnt
atgaaaagtcactggaaaattacagctttcttttacctgtgtagttttctgtggtctttc
atctcagccaccatccagcaccaatcaagactgccagttattctgggtgccagtcacaga
attgatatctgcccaacaatcaggattggccaagatgacttaccaggctttgatctgatt
tctcagtttcaaatagaaaaagctgcttcccaaggaattattgagagagtagtgggatcc
acttctctacaagtagcctataaattgggacccaatgtagacttcaggataccaaccagt
gccatatattccaacggattgcctgatgaatattccttcctaactacttttcggatgact
ggggccacacttcagaaatactggactatttggcagattcaggattcttcaggaaaagaa
caagttggagtgaatcttaatggccaaatgaaaagtgttgagttttcttataaaggagca
gatggaaaacaccaaacagcatcatttttacatttgcctttcttgtttgactcccagtgg
cacaagcttatgataattgtggaatctaacagtgtcacactttttattgactgtattaaa
atagagtctttaaacataaaaccaaaagggaaaatcaacactgatggctttgctgtgctt
ggaaaacttaaaaataatcctcaaatttcagttccgttcgagatccagtggatggtgatc
cactgcgaccctctgcgaccccagcgcgaaggctgcggcgagctgccggctcgggtaacc
cagacgggaatcgagagaggcccccctggtccaccaggccccccaggtccaccagggcca
ccaggagttcccggtattgatggcattgatggggagagaggcccgaagggcccccctggt
ccaccgggtccagatggggatgcaggcaaaccaggatccccaggtttgcctggagagccg
ggagctgatggattcacaggacctgatggctcacggggagctccgggactaaaaggacag
aagggggagccaggactgccaggtgctcgtggacttccaggcaaggggcttcttggacca
cctggtccagctggtgcagcaggacttcctggggaagtaggtcgtgctggtccacctgga
gatccaggaaaaagagggccaccagggctaccaggacctccaggccctcctggaacgatt
ggccttcaagatggcgacgtgctgtgtcccagtgcttgtcctcctggccgcccaggacat
gctggcttaatgggtatgaaggggcaaaaaggttcaaaaggagagtctggtgaaccagga
aaacaaggttataagggtgaagaaggggaccaaggacccagtggtgaagtgggagctcaa
ggccctccaggcattctaggtatcagaggtataactggtataatgggacctaaaggtacc
aaaggagctcgtggccttgatggtgatcctggtccccaaggtcttcctggtgcacctggg
gatcaaggacagagaggtccactaggagaggcaggtccaaagggagaaaggggtcctcaa
ggtacaagaggaataaatggcctccctgggcctaaaggagagcctggcttaccaggagtt
gatggccgtgaagggatccctggaatgcctggagctaaaggtgaaccaggaaaacctgga
gctccaggtgatacagggctccagggattgccaggtttcccaggctctccaggtatgaaa
ggcattcctggcccaaagggtaatagaggtcctcctggggtgccagggttaatgggaaat
cctggtaaacagggtcaacagggcccagagggagaagcaggtccaacaggaccccgggga
ccaccaggtagcagaggggagactggtcctgcaggtgctccgggtttaccagggaagttg
ggtccccagggtaatattggacttcctggactgcctggtcctccgggtcttcctggtggt
aaaggtgaccggggttcagtgggtgaaccaggacctaagggtgaacaaggtgcacctgga
gcagaaggagatggaggagaaaagggtgacttaggtgacatgggattaccaggagcaaag
ggagctgttggtaatcctggagaccccggttcccgtgggcctgaggggagtcggggactg
cctggcatggaagggccacgaggctcacctggaccacgaggcttgcctggtgagcagggt
gccccaggcctgcctggcagtgagggtccagctggaaaagaaccaagcgatcagcacatt
aagcaggtttgcataagagtcatgcaagaacaattagctcagctggcagccagccttagg
aggccagaatttggtgctccaggtcttcctggccgaccagggccaccaggtgctccaggg
cctgctggtgaaaatggtttcccaggacagcttggcccccgtggcctgcctggccttaaa
ggtccccctggtgagattgggcgtaaaggtcctaaaggtgaaccaggagaaagaggagaa
agaggatttccaggcagaggactgaaaggttatcctggaccaagaggtcttccaggtgaa
ccaggcaaagccagctacggcagggaaggccgtgacggtgaccgaggtccccccggggtg
gccgggcagcctggggttcccggtccccccggccctcccggccctcccggctactgcgag
ccggcgtcctgcagggtgcaggcgggacagagagcagggaagaacatgaaagggccctga

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