Sylvia atricapilla (blackcap): 136358572
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Entry
136358572 CDS
T10263
Symbol
SHH
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
136358572 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sati01002
]
136358572 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sati00536
]
136358572 (SHH)
Peptidases and inhibitors [BR:
sati01002
]
Cysteine peptidases
Family C46: hedgehog family
136358572 (SHH)
Glycosaminoglycan binding proteins [BR:
sati00536
]
Heparan sulfate / Heparin
Morphogens
136358572 (SHH)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
VldE
DrmE_C
Vint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
136358572
NCBI-ProteinID:
XP_066170549
LinkDB
All DBs
Position
1:complement(8159577..8169403)
Genome browser
AA seq
425 aa
AA seq
DB search
MDEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEKGGTKLVKDLRPGDRVLVADTEGRLLYSD
FLTFLDREDGSHKLFYAIETRQPRARLLLTAAHLLFVAPQQNQSEAGPAGGRALFASRVR
PGQRVFVLGEGGRQLLPAAVHRVSLREEASGAYAPLTAQGTILIDRVLASCYAVVEEHSW
AHWAFAPFRLLQAVLAALGPSADGAPMAEPPAPGIHWYSRLLYRIGSWVLDSDSLHPLGM
MVTSS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctcttggtgggcttcatctgcgctctttta
gtctcctctgggctgacttgtggaccaggcaggggcattggaaaaaggagacaccccaaa
aagctgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatcacaagaaactccgagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacacgggagctgacagactg
atgactcagcgctgcaaggacaagctgaacgctctggccatctcggtgatgaaccagtgg
cccggggtaaagctgcgggtaaccgagggctgggacgaggacggccaccactccgaggag
tccctgcactacgagggccgcgccgtggacatcaccacctcggaccgggaccgcagcaag
tacggcatgctggcccgcctggccgtcgaggctggcttcgactgggtctactacgagtcc
aaggcgcacatccactgctccgtcaaagcagaaaactccgtggccgccaaatctgggggt
tgcttccctggctcggccacggtgcacctggagaaaggcgggaccaagctggtgaaggac
ctgaggccaggagacagggtgctggtggccgacaccgaaggccgtctgctctacagcgac
ttcctcaccttcctggaccgcgaggacggctcccacaagctcttctacgccatcgagact
cggcagccccgggcccggctgctgctgacggccgcccacctgctcttcgtggccccccag
cagaaccagtccgaggcgggccccgccggcggccgggcgctgttcgccagccgcgtgcgg
ccgggccagcgggtgttcgtgctgggcgagggcgggcggcagctgctgccggcggccgtg
caccgcgtgtcgctgagggaggaggcgtcgggcgcctacgccccgctcaccgcccagggc
accatcctcatcgaccgcgtgctggcctcgtgctacgccgtcgtcgaggagcacagctgg
gcgcactgggccttcgctcccttccgcctgctgcaggccgtgctggccgccctggggccc
tccgcggacggggccccgatggcagagcccccggcccccggcatccactggtactctcgg
ctcctctaccgcatcggcagctgggtgctggatagtgactctctgcacccgctgggcatg
atggtgacgtccagctga
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